/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
+ * Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.ws;
import jalview.gui.Desktop;
import jalview.gui.JvSwingUtils;
import jalview.util.GroupUrlLink;
+import jalview.util.MessageManager;
import jalview.util.GroupUrlLink.UrlStringTooLongException;
import java.awt.Component;
import java.awt.Cursor;
import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.ItemEvent;
-import java.awt.event.ItemListener;
-import java.io.BufferedOutputStream;
-import java.io.BufferedReader;
-import java.io.InputStreamReader;
-import java.io.OutputStreamWriter;
-import java.io.PrintWriter;
-import java.io.StringWriter;
import java.io.UnsupportedEncodingException;
import java.net.URL;
import java.net.URLEncoder;
-import java.nio.charset.Charset;
-import java.nio.charset.CharsetEncoder;
import java.util.Hashtable;
import java.util.Map;
import java.util.Vector;
import javax.xml.parsers.SAXParser;
import javax.xml.parsers.SAXParserFactory;
-import org.apache.axis.utils.StringUtils;
-import org.apache.http.client.utils.URLEncodedUtils;
-import org.apache.http.entity.StringEntity;
import org.xml.sax.Attributes;
import org.xml.sax.SAXException;
import org.xml.sax.helpers.DefaultHandler;
/**
* Lightweight runnable to discover dynamic 'one way' group URL services
*
+ * as of Jalview 2.8.1 this class is mothballed and will be dropped in v3.
+ *
* @author JimP
+ * @deprecated
*
*/
public class EnfinEnvision2OneWay extends DefaultHandler implements
System.err.println("Adding entry for " + wfname + " " + description);
if (wfname.toLowerCase().indexOf("funcnet") == -1)
{
- description = Pattern.compile("\\s+",Pattern.MULTILINE).matcher(description).replaceAll(" ");
+ description = Pattern.compile("\\s+", Pattern.MULTILINE)
+ .matcher(description).replaceAll(" ");
groupURLdescr.addElement(description);
groupURLdescr.addElement(description);
- String urlstub=wfname;
- if (wfname.indexOf(" ")>-1)
+ String urlstub = wfname;
+ if (wfname.indexOf(" ") > -1)
{
- // make the name safe!
- try {
- urlstub = URLEncoder.encode(wfname,"utf-8");
- } catch (UnsupportedEncodingException e) {
- // TODO Auto-generated catch block
- e.printStackTrace();
- }
+ // make the name safe!
+ try
+ {
+ urlstub = URLEncoder.encode(wfname, "utf-8");
+ } catch (UnsupportedEncodingException e)
+ {
+ // TODO Auto-generated catch block
+ e.printStackTrace();
+ }
}
groupURLLinks
.addElement(wfname
return;
}
}
- try {
+ try
+ {
descr = HtmlEncoder.encode(descr);
- } catch (Exception e){};
-
+ } catch (Exception e)
+ {
+ }
+ ;
+
boolean seqsorids = (urlgenerator.getGroupURLType() & urlgenerator.SEQUENCEIDS) == 0;
int i = urlgenerator.getNumberInvolved(urlstub);
JMenuItem item = new JMenuItem(label);
{
dbname = "";
}
- item.setToolTipText("<html>"
- + JvSwingUtils.wrapTooltip("Submit " + i + " " + dbname + " "
- + (seqsorids ? "sequence" : "sequence id")
- + (i > 1 ? "s" : "")
-
- + " to<br/>" + descr) + "</html>");
+ item.setToolTipText(JvSwingUtils.wrapTooltip(true, MessageManager.formatMessage("label.submit_sequence", new String[]{Integer.valueOf(i).toString(), dbname, (seqsorids ? "sequence" : "sequence id"), (i > 1 ? "s" : "")})));
item.addActionListener(new java.awt.event.ActionListener()
{
public void actionPerformed(ActionEvent e)
JOptionPane
.showInternalMessageDialog(
Desktop.desktop,
- "Unixers: Couldn't find default web browser."
- + "\nAdd the full path to your browser in Preferences.",
- "Web browser not found", JOptionPane.WARNING_MESSAGE);
+ MessageManager.getString("label.web_browser_not_found_unix"),
+ MessageManager.getString("label.web_browser_not_found"), JOptionPane.WARNING_MESSAGE);
ex.printStackTrace();
}
// menu appears asap
// sequence only URLs
// ID/regex match URLs
- JMenu groupLinksMenu = new JMenu("Group Link");
+ JMenu groupLinksMenu = new JMenu(MessageManager.getString("action.group_link"));
String[][] idandseqs = GroupUrlLink.formStrings(seqs);
Hashtable commonDbrefs = new Hashtable();
for (int sq = 0; sq < seqs.length; sq++)
// three types of url that might be
// created.
wflinkMenus = new JMenu[]
- { null, new JMenu("IDS"), new JMenu("Sequences"),
- new JMenu("IDS and Sequences") };
+ { null, new JMenu(MessageManager.getString("action.ids")), new JMenu(MessageManager.getString("action.sequences")),
+ new JMenu(MessageManager.getString("action.ids_sequences")) };
gurlMenus.put(label, wflinkMenus);
}
git://source.jalview.org / jalview.git / blobdiff