JAL-1620 version bump and release notes

[jalview.git] / src / jalview / ws / jws1 / Annotate3D.java

diff --git a/src/jalview/ws/jws1/Annotate3D.java b/src/jalview/ws/jws1/Annotate3D.java
index d0712da..509d4ae 100644 (file)
--- a/src/jalview/ws/jws1/Annotate3D.java
+++ b/src/jalview/ws/jws1/Annotate3D.java
@@ -1,5 +1,5 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
  * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
@@ -25,6 +25,7 @@ import jalview.datamodel.AlignmentI;
 import jalview.io.FileParse;
 import jalview.io.FormatAdapter;
 import jalview.io.InputStreamParser;
+import jalview.util.MessageManager;
 
 import java.io.BufferedReader;
 import java.io.FileReader;
@@ -82,15 +83,17 @@ public class Annotate3D
       }
       Iterator<Reader> r = jalview.ext.paradise.Annotate3D
               .getRNAMLForPDBFileAsString(sb.toString());
-      AlignmentI al=null;
+      AlignmentI al = null;
       while (r.hasNext())
       {
         FileParse fp = new InputStreamParser(r.next(), source.getDataName());
         AlignmentI nal = new FormatAdapter().readFromFile(fp, "RNAML");
-        if (al==null)
+        if (al == null)
         {
           al = nal;
-        } else {
+        }
+        else
+        {
           al.append(nal);
         }
       }
@@ -103,8 +106,7 @@ public class Annotate3D
       }
       else
       {
-        throw new IOException(
-                "Unexpected exception when handling RNAML translation of PDB data",
+        throw new IOException(MessageManager.getString("exception.unexpected_handling_rnaml_translation_for_pdb"),
                 x);
       }
     }