/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
/**
*
import jalview.bin.Cache;
import jalview.ws.jws2.jabaws2.Jws2Instance;
+import jalview.ws.jws2.jabaws2.Jws2InstanceFactory;
import java.util.HashSet;
import java.util.Set;
{ Services.ClustalWS, Services.MuscleWS, Services.MafftWS,
Services.ProbconsWS, Services.TcoffeeWS, Services.AAConWS,
Services.DisemblWS, Services.GlobPlotWS, Services.IUPredWS,
- Services.JronnWS };
+ Services.JronnWS, Services.RNAalifoldWS };
/*
* (non-Javadoc)
jabasws2 = true;
srv_set = registry.getSupportedServices();
+
+ // dan test
+ System.out.println("registry.getSupportedServices: " + srv_set.toString());
+
svccategories = registry.getServiceCategories();
+
+ // dan test
+// System.out.println("registry.getServiceCategories: " + svccategories.toString());
}
} catch (Exception ex)
String description = registry.getServiceDescription(srv);
- svc = new Jws2Instance(jwsservers, srv.toString(),
+ svc = Jws2InstanceFactory.newJws2Instance(jwsservers, srv.toString(),
cat.name, description, service);
}
if (svc == null)
{
- svc = new Jws2Instance(jwsservers, srv.toString(),
+ svc = Jws2InstanceFactory.newJws2Instance(jwsservers, srv.toString(),
cat.name, "JABAWS 1 Alignment Service", service);
}
jws2Discoverer.addService(jwsservers, svc);