JAL-1620 version bump and release notes

[jalview.git] / src / jalview / ws / rest / RestJob.java

diff --git a/src/jalview/ws/rest/RestJob.java b/src/jalview/ws/rest/RestJob.java
index 770824a..f080127 100644 (file)
--- a/src/jalview/ws/rest/RestJob.java
+++ b/src/jalview/ws/rest/RestJob.java
@@ -1,5 +1,5 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
  * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
@@ -90,13 +90,15 @@ public class RestJob extends AWsJob
     // get sequences for the alignmentI
     // get groups trimmed to alignment columns
     // get any annotation trimmed to start/end columns, too.
-    squniq = jalview.analysis.SeqsetUtils.uniquify(_input.getSequencesArray(), true);
+    squniq = jalview.analysis.SeqsetUtils.uniquify(
+            _input.getSequencesArray(), true);
     // prepare input
     // form alignment+groups+annotation,preprocess and then record references
     // for formatters
     ArrayList<InputType> alinp = new ArrayList<InputType>();
     int paramsWithData = 0;
-    // TODO: JAL-715 - generalise the following validation logic for all parameter types
+    // TODO: JAL-715 - generalise the following validation logic for all
+    // parameter types
     // we cheat for moment - since we know a-priori what data is available and
     // what inputs we have implemented so far
     for (Map.Entry<String, InputType> prm : rsd.inputParams.entrySet())
@@ -113,7 +115,9 @@ public class RestJob extends AWsJob
                   && _input.getGroups() != null
                   && _input.getGroups().size() >= -1 + prm.getValue().min)
           {
-            // the test above is not rigorous but fixes JAL-1298, since submission will fail if the partition set doesn't contain at least one partition
+            // the test above is not rigorous but fixes JAL-1298, since
+            // submission will fail if the partition set doesn't contain at
+            // least one partition
             alinp.add(prm.getValue());
           }
           else