JAL-1620 version bump and release notes

[jalview.git] / src / jalview / ws / rest / params / SeqIdVector.java

diff --git a/src/jalview/ws/rest/params/SeqIdVector.java b/src/jalview/ws/rest/params/SeqIdVector.java
index c77c8da..3dfa3c9 100644 (file)
--- a/src/jalview/ws/rest/params/SeqIdVector.java
+++ b/src/jalview/ws/rest/params/SeqIdVector.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
+ * Copyright (C) 2014 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.ws.rest.params;
 
 import jalview.datamodel.AlignmentI;
@@ -7,15 +27,11 @@ import jalview.ws.params.simple.Option;
 import jalview.ws.rest.InputType;
 import jalview.ws.rest.NoValidInputDataException;
 import jalview.ws.rest.RestJob;
-import jalview.ws.rest.RestServiceDescription;
-import jalview.ws.rest.InputType.molType;
 
 import java.io.UnsupportedEncodingException;
 import java.util.ArrayList;
 import java.util.Arrays;
 import java.util.List;
-import java.util.regex.Matcher;
-import java.util.regex.Pattern;
 
 import org.apache.http.entity.mime.content.ContentBody;
 import org.apache.http.entity.mime.content.StringBody;
@@ -64,9 +80,9 @@ public class SeqIdVector extends InputType
     ArrayList<String> prms = new ArrayList<String>();
     super.addBaseParams(prms);
     prms.add("sep='" + sep + "'");
-    if (type!=null)
+    if (type != null)
     {
-      prms.add("type='"+type+"'");
+      prms.add("type='" + type + "'");
     }
     return prms;
   }
@@ -114,8 +130,7 @@ public class SeqIdVector extends InputType
             "Separator character between elements of vector", true, ",",
             sep, Arrays.asList(new String[]
             { " ", ",", ";", "\t", "|" }), null));
-    lst.add(createMolTypeOption("type", "Sequence type", false, type,
-            null));
+    lst.add(createMolTypeOption("type", "Sequence type", false, type, null));
     return lst;
   }
 }