*/
package jalview.ws.seqfetcher;
+import jalview.bin.Cache;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.DBRefEntry;
+import jalview.datamodel.SequenceI;
+import jalview.util.DBRefUtils;
+import jalview.util.MessageManager;
+import jalview.util.QuickSort;
+
import java.util.ArrayList;
import java.util.Enumeration;
import java.util.HashSet;
import java.util.Stack;
import java.util.Vector;
-import jalview.datamodel.AlignmentI;
-import jalview.datamodel.DBRefEntry;
-import jalview.datamodel.SequenceI;
-import jalview.util.DBRefUtils;
-import jalview.util.MessageManager;
-
public class ASequenceFetcher
{
return true;
}
}
- jalview.bin.Cache.log.warn("isFetchable doesn't know about '" + source
+ Cache.log.warn("isFetchable doesn't know about '" + source
+ "'");
return false;
}
- public SequenceI[] getSequences(jalview.datamodel.DBRefEntry[] refs)
+ public SequenceI[] getSequences(DBRefEntry[] refs)
{
SequenceI[] ret = null;
Vector<SequenceI> rseqs = new Vector();
{
nm[i++] = "" + s.getTier() + s.getDbName().toLowerCase();
}
- jalview.util.QuickSort.sort(nm, l);
+ QuickSort.sort(nm, l);
dbs = new ArrayList<DbSourceProxy>();
for (i = l.length - 1; i >= 0; i--)
{
*/
public String[] getDbInstances(Class class1)
{
- if (!jalview.ws.seqfetcher.DbSourceProxy.class.isAssignableFrom(class1))
+ if (!DbSourceProxy.class.isAssignableFrom(class1))
{
throw new Error(MessageManager.formatMessage("error.implementation_error_dbinstance_must_implement_interface", new String[]{class1.toString()}));
}