// Generated on: 2015.10.09 at 03:18:33 PM BST
//
-
package jalview.xml.binding.sifts;
import java.math.BigInteger;
import javax.xml.bind.annotation.XmlType;
import javax.xml.bind.annotation.XmlValue;
-
/**
- * <p>Java class for anonymous complex type.
+ * <p>
+ * Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>
+ * The following schema fragment specifies the expected content contained within
+ * this class.
*
* <pre>
* <complexType>
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
-@XmlType(name = "", propOrder = {
- "alignObject",
- "score",
- "block",
- "geo3D"
-})
+@XmlType(
+ name = "",
+ propOrder =
+ { "alignObject", "score", "block", "geo3D" })
@XmlRootElement(name = "alignment")
-public class Alignment {
-
- @XmlElement(required = true)
- protected List<Alignment.AlignObject> alignObject;
- protected List<Alignment.Score> score;
- @XmlElement(required = true)
- protected List<Alignment.Block> block;
- @XmlElement(name = "geo3d")
- protected List<Alignment.Geo3D> geo3D;
- @XmlAttribute(name = "alignType", required = true)
- protected String alignType;
+public class Alignment
+{
+
+ @XmlElement(required = true)
+ protected List<Alignment.AlignObject> alignObject;
+
+ protected List<Alignment.Score> score;
+
+ @XmlElement(required = true)
+ protected List<Alignment.Block> block;
+
+ @XmlElement(name = "geo3d")
+ protected List<Alignment.Geo3D> geo3D;
+
+ @XmlAttribute(name = "alignType", required = true)
+ protected String alignType;
+
+ /**
+ * Gets the value of the alignObject property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
+ * for the alignObject property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ *
+ * <pre>
+ * getAlignObject().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list
+ * {@link Alignment.AlignObject }
+ *
+ *
+ */
+ public List<Alignment.AlignObject> getAlignObject()
+ {
+ if (alignObject == null)
+ {
+ alignObject = new ArrayList<Alignment.AlignObject>();
+ }
+ return this.alignObject;
+ }
+
+ /**
+ * Gets the value of the score property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
+ * for the score property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ *
+ * <pre>
+ * getScore().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list
+ * {@link Alignment.Score }
+ *
+ *
+ */
+ public List<Alignment.Score> getScore()
+ {
+ if (score == null)
+ {
+ score = new ArrayList<Alignment.Score>();
+ }
+ return this.score;
+ }
+
+ /**
+ * Gets the value of the block property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
+ * for the block property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ *
+ * <pre>
+ * getBlock().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list
+ * {@link Alignment.Block }
+ *
+ *
+ */
+ public List<Alignment.Block> getBlock()
+ {
+ if (block == null)
+ {
+ block = new ArrayList<Alignment.Block>();
+ }
+ return this.block;
+ }
+
+ /**
+ * Gets the value of the geo3D property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list, not a snapshot.
+ * Therefore any modification you make to the returned list will be present
+ * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
+ * for the geo3D property.
+ *
+ * <p>
+ * For example, to add a new item, do as follows:
+ *
+ * <pre>
+ * getGeo3D().add(newItem);
+ * </pre>
+ *
+ *
+ * <p>
+ * Objects of the following type(s) are allowed in the list
+ * {@link Alignment.Geo3D }
+ *
+ *
+ */
+ public List<Alignment.Geo3D> getGeo3D()
+ {
+ if (geo3D == null)
+ {
+ geo3D = new ArrayList<Alignment.Geo3D>();
+ }
+ return this.geo3D;
+ }
+
+ /**
+ * Gets the value of the alignType property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getAlignType()
+ {
+ return alignType;
+ }
+
+ /**
+ * Sets the value of the alignType property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setAlignType(String value)
+ {
+ this.alignType = value;
+ }
+
+ /**
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="alignObjectDetail" maxOccurs="unbounded" minOccurs="0">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}detail"/>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="sequence" minOccurs="0">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}region"/>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}dbRef"/>
+ * <attribute name="objectVersion" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="intObjectId" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="type" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = { "alignObjectDetail", "sequence" })
+ public static class AlignObject
+ {
+
+ protected List<Alignment.AlignObject.AlignObjectDetail> alignObjectDetail;
+
+ protected Alignment.AlignObject.Sequence sequence;
+
+ @XmlAttribute(name = "objectVersion", required = true)
+ protected String objectVersion;
+
+ @XmlAttribute(name = "intObjectId", required = true)
+ protected String intObjectId;
+
+ @XmlAttribute(name = "type")
+ protected String type;
+
+ @XmlAttribute(name = "dbSource", required = true)
+ protected String dbSource;
+
+ @XmlAttribute(name = "dbCoordSys", required = true)
+ protected String dbCoordSys;
+
+ @XmlAttribute(name = "dbAccessionId", required = true)
+ protected String dbAccessionId;
+
+ @XmlAttribute(name = "dbEvidence")
+ protected String dbEvidence;
+
+ @XmlAttribute(name = "dbVersion")
+ protected String dbVersion;
/**
- * Gets the value of the alignObject property.
+ * Gets the value of the alignObjectDetail property.
*
* <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the alignObject property.
+ * This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will
+ * be present inside the JAXB object. This is why there is not a
+ * <CODE>set</CODE> method for the alignObjectDetail property.
*
* <p>
* For example, to add a new item, do as follows:
+ *
* <pre>
- * getAlignObject().add(newItem);
+ * getAlignObjectDetail().add(newItem);
* </pre>
*
*
* <p>
* Objects of the following type(s) are allowed in the list
- * {@link Alignment.AlignObject }
+ * {@link Alignment.AlignObject.AlignObjectDetail }
*
*
*/
- public List<Alignment.AlignObject> getAlignObject() {
- if (alignObject == null) {
- alignObject = new ArrayList<Alignment.AlignObject>();
- }
- return this.alignObject;
+ public List<Alignment.AlignObject.AlignObjectDetail> getAlignObjectDetail()
+ {
+ if (alignObjectDetail == null)
+ {
+ alignObjectDetail = new ArrayList<Alignment.AlignObject.AlignObjectDetail>();
+ }
+ return this.alignObjectDetail;
+ }
+
+ /**
+ * Gets the value of the sequence property.
+ *
+ * @return possible object is {@link Alignment.AlignObject.Sequence }
+ *
+ */
+ public Alignment.AlignObject.Sequence getSequence()
+ {
+ return sequence;
+ }
+
+ /**
+ * Sets the value of the sequence property.
+ *
+ * @param value
+ * allowed object is {@link Alignment.AlignObject.Sequence }
+ *
+ */
+ public void setSequence(Alignment.AlignObject.Sequence value)
+ {
+ this.sequence = value;
+ }
+
+ /**
+ * Gets the value of the objectVersion property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getObjectVersion()
+ {
+ return objectVersion;
+ }
+
+ /**
+ * Sets the value of the objectVersion property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setObjectVersion(String value)
+ {
+ this.objectVersion = value;
+ }
+
+ /**
+ * Gets the value of the intObjectId property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getIntObjectId()
+ {
+ return intObjectId;
}
/**
- * Gets the value of the score property.
+ * Sets the value of the intObjectId property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setIntObjectId(String value)
+ {
+ this.intObjectId = value;
+ }
+
+ /**
+ * Gets the value of the type property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getType()
+ {
+ return type;
+ }
+
+ /**
+ * Sets the value of the type property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setType(String value)
+ {
+ this.type = value;
+ }
+
+ /**
+ * Gets the value of the dbSource property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getDbSource()
+ {
+ return dbSource;
+ }
+
+ /**
+ * Sets the value of the dbSource property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setDbSource(String value)
+ {
+ this.dbSource = value;
+ }
+
+ /**
+ * Gets the value of the dbCoordSys property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getDbCoordSys()
+ {
+ return dbCoordSys;
+ }
+
+ /**
+ * Sets the value of the dbCoordSys property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setDbCoordSys(String value)
+ {
+ this.dbCoordSys = value;
+ }
+
+ /**
+ * Gets the value of the dbAccessionId property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getDbAccessionId()
+ {
+ return dbAccessionId;
+ }
+
+ /**
+ * Sets the value of the dbAccessionId property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setDbAccessionId(String value)
+ {
+ this.dbAccessionId = value;
+ }
+
+ /**
+ * Gets the value of the dbEvidence property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getDbEvidence()
+ {
+ return dbEvidence;
+ }
+
+ /**
+ * Sets the value of the dbEvidence property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setDbEvidence(String value)
+ {
+ this.dbEvidence = value;
+ }
+
+ /**
+ * Gets the value of the dbVersion property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getDbVersion()
+ {
+ return dbVersion;
+ }
+
+ /**
+ * Sets the value of the dbVersion property.
+ *
+ * @param value
+ * allowed object is {@link String }
*
+ */
+ public void setDbVersion(String value)
+ {
+ this.dbVersion = value;
+ }
+
+ /**
* <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the score property.
+ * Java class for anonymous complex type.
*
* <p>
- * For example, to add a new item, do as follows:
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
* <pre>
- * getScore().add(newItem);
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}detail"/>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
* </pre>
*
*
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = { "content" })
+ public static class AlignObjectDetail
+ {
+
+ @XmlValue
+ protected String content;
+
+ @XmlAttribute(name = "dbSource")
+ protected String dbSource;
+
+ @XmlAttribute(name = "property", required = true)
+ protected String property;
+
+ /**
+ * Gets the value of the content property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getContent()
+ {
+ return content;
+ }
+
+ /**
+ * Sets the value of the content property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setContent(String value)
+ {
+ this.content = value;
+ }
+
+ /**
+ * Gets the value of the dbSource property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getDbSource()
+ {
+ return dbSource;
+ }
+
+ /**
+ * Sets the value of the dbSource property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setDbSource(String value)
+ {
+ this.dbSource = value;
+ }
+
+ /**
+ * Gets the value of the property property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getProperty()
+ {
+ return property;
+ }
+
+ /**
+ * Sets the value of the property property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setProperty(String value)
+ {
+ this.property = value;
+ }
+
+ }
+
+ /**
* <p>
- * Objects of the following type(s) are allowed in the list
- * {@link Alignment.Score }
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}region"/>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
*
*
*/
- public List<Alignment.Score> getScore() {
- if (score == null) {
- score = new ArrayList<Alignment.Score>();
- }
- return this.score;
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = { "content" })
+ public static class Sequence
+ {
+
+ @XmlValue
+ protected String content;
+
+ @XmlAttribute(name = "start")
+ protected String start;
+
+ @XmlAttribute(name = "end")
+ protected String end;
+
+ /**
+ * Gets the value of the content property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getContent()
+ {
+ return content;
+ }
+
+ /**
+ * Sets the value of the content property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setContent(String value)
+ {
+ this.content = value;
+ }
+
+ /**
+ * Gets the value of the start property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getStart()
+ {
+ return start;
+ }
+
+ /**
+ * Sets the value of the start property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setStart(String value)
+ {
+ this.start = value;
+ }
+
+ /**
+ * Gets the value of the end property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getEnd()
+ {
+ return end;
+ }
+
+ /**
+ * Sets the value of the end property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setEnd(String value)
+ {
+ this.end = value;
+ }
+
}
+ }
+
+ /**
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="segment" maxOccurs="unbounded">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence minOccurs="0">
+ * <element name="cigar" type="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}cigarstring"/>
+ * </sequence>
+ * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}region"/>
+ * <attribute name="intObjectId" use="required" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
+ * <attribute name="strand" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * <attribute name="blockScore" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="blockOrder" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = { "segment" })
+ public static class Block
+ {
+
+ @XmlElement(required = true)
+ protected List<Alignment.Block.Segment> segment;
+
+ @XmlAttribute(name = "blockScore")
+ protected String blockScore;
+
+ @XmlAttribute(name = "blockOrder", required = true)
+ protected BigInteger blockOrder;
+
/**
- * Gets the value of the block property.
+ * Gets the value of the segment property.
*
* <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the block property.
+ * This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will
+ * be present inside the JAXB object. This is why there is not a
+ * <CODE>set</CODE> method for the segment property.
*
* <p>
* For example, to add a new item, do as follows:
+ *
* <pre>
- * getBlock().add(newItem);
+ * getSegment().add(newItem);
* </pre>
*
*
* <p>
* Objects of the following type(s) are allowed in the list
- * {@link Alignment.Block }
+ * {@link Alignment.Block.Segment }
*
*
*/
- public List<Alignment.Block> getBlock() {
- if (block == null) {
- block = new ArrayList<Alignment.Block>();
- }
- return this.block;
+ public List<Alignment.Block.Segment> getSegment()
+ {
+ if (segment == null)
+ {
+ segment = new ArrayList<Alignment.Block.Segment>();
+ }
+ return this.segment;
+ }
+
+ /**
+ * Gets the value of the blockScore property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getBlockScore()
+ {
+ return blockScore;
+ }
+
+ /**
+ * Sets the value of the blockScore property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setBlockScore(String value)
+ {
+ this.blockScore = value;
+ }
+
+ /**
+ * Gets the value of the blockOrder property.
+ *
+ * @return possible object is {@link BigInteger }
+ *
+ */
+ public BigInteger getBlockOrder()
+ {
+ return blockOrder;
+ }
+
+ /**
+ * Sets the value of the blockOrder property.
+ *
+ * @param value
+ * allowed object is {@link BigInteger }
+ *
+ */
+ public void setBlockOrder(BigInteger value)
+ {
+ this.blockOrder = value;
}
/**
- * Gets the value of the geo3D property.
+ * <p>
+ * Java class for anonymous complex type.
*
* <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the geo3D property.
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence minOccurs="0">
+ * <element name="cigar" type="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}cigarstring"/>
+ * </sequence>
+ * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}region"/>
+ * <attribute name="intObjectId" use="required" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
+ * <attribute name="strand" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = { "cigar" })
+ public static class Segment
+ {
+
+ protected String cigar;
+
+ @XmlAttribute(name = "intObjectId", required = true)
+ @XmlSchemaType(name = "anySimpleType")
+ protected String intObjectId;
+
+ @XmlAttribute(name = "strand")
+ @XmlSchemaType(name = "anySimpleType")
+ protected String strand;
+
+ @XmlAttribute(name = "start")
+ protected String start;
+
+ @XmlAttribute(name = "end")
+ protected String end;
+
+ /**
+ * Gets the value of the cigar property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getCigar()
+ {
+ return cigar;
+ }
+
+ /**
+ * Sets the value of the cigar property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setCigar(String value)
+ {
+ this.cigar = value;
+ }
+
+ /**
+ * Gets the value of the intObjectId property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getIntObjectId()
+ {
+ return intObjectId;
+ }
+
+ /**
+ * Sets the value of the intObjectId property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setIntObjectId(String value)
+ {
+ this.intObjectId = value;
+ }
+
+ /**
+ * Gets the value of the strand property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getStrand()
+ {
+ return strand;
+ }
+
+ /**
+ * Sets the value of the strand property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setStrand(String value)
+ {
+ this.strand = value;
+ }
+
+ /**
+ * Gets the value of the start property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getStart()
+ {
+ return start;
+ }
+
+ /**
+ * Sets the value of the start property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setStart(String value)
+ {
+ this.start = value;
+ }
+
+ /**
+ * Gets the value of the end property.
+ *
+ * @return possible object is {@link String }
+ *
+ */
+ public String getEnd()
+ {
+ return end;
+ }
+
+ /**
+ * Sets the value of the end property.
+ *
+ * @param value
+ * allowed object is {@link String }
+ *
+ */
+ public void setEnd(String value)
+ {
+ this.end = value;
+ }
+
+ }
+
+ }
+
+ /**
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="vector">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="x" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * <attribute name="y" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * <attribute name="z" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="matrix" maxOccurs="unbounded">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <sequence>
+ * <element name="max11">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max12">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max13">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max21">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max22">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max23">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max31">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max32">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max33">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * </sequence>
+ * <attribute name="intObjectId" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "", propOrder = { "vector", "matrix" })
+ public static class Geo3D
+ {
+
+ @XmlElement(required = true)
+ protected Alignment.Geo3D.Vector vector;
+
+ @XmlElement(required = true)
+ protected List<Alignment.Geo3D.Matrix> matrix;
+
+ @XmlAttribute(name = "intObjectId", required = true)
+ protected String intObjectId;
+
+ /**
+ * Gets the value of the vector property.
+ *
+ * @return possible object is {@link Alignment.Geo3D.Vector }
+ *
+ */
+ public Alignment.Geo3D.Vector getVector()
+ {
+ return vector;
+ }
+
+ /**
+ * Sets the value of the vector property.
+ *
+ * @param value
+ * allowed object is {@link Alignment.Geo3D.Vector }
+ *
+ */
+ public void setVector(Alignment.Geo3D.Vector value)
+ {
+ this.vector = value;
+ }
+
+ /**
+ * Gets the value of the matrix property.
+ *
+ * <p>
+ * This accessor method returns a reference to the live list, not a
+ * snapshot. Therefore any modification you make to the returned list will
+ * be present inside the JAXB object. This is why there is not a
+ * <CODE>set</CODE> method for the matrix property.
*
* <p>
* For example, to add a new item, do as follows:
+ *
* <pre>
- * getGeo3D().add(newItem);
+ * getMatrix().add(newItem);
* </pre>
*
*
* <p>
* Objects of the following type(s) are allowed in the list
- * {@link Alignment.Geo3D }
+ * {@link Alignment.Geo3D.Matrix }
*
*
*/
- public List<Alignment.Geo3D> getGeo3D() {
- if (geo3D == null) {
- geo3D = new ArrayList<Alignment.Geo3D>();
- }
- return this.geo3D;
+ public List<Alignment.Geo3D.Matrix> getMatrix()
+ {
+ if (matrix == null)
+ {
+ matrix = new ArrayList<Alignment.Geo3D.Matrix>();
+ }
+ return this.matrix;
}
/**
- * Gets the value of the alignType property.
+ * Gets the value of the intObjectId property.
+ *
+ * @return possible object is {@link String }
*
- * @return
- * possible object is
- * {@link String }
- *
*/
- public String getAlignType() {
- return alignType;
+ public String getIntObjectId()
+ {
+ return intObjectId;
}
/**
- * Sets the value of the alignType property.
+ * Sets the value of the intObjectId property.
*
* @param value
- * allowed object is
- * {@link String }
- *
+ * allowed object is {@link String }
+ *
*/
- public void setAlignType(String value) {
- this.alignType = value;
+ public void setIntObjectId(String value)
+ {
+ this.intObjectId = value;
}
-
/**
- * <p>Java class for anonymous complex type.
+ * <p>
+ * Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
*
* <pre>
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
* <sequence>
- * <element name="alignObjectDetail" maxOccurs="unbounded" minOccurs="0">
+ * <element name="max11">
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}detail"/>
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
* </restriction>
* </complexContent>
* </complexType>
* </element>
- * <element name="sequence" minOccurs="0">
+ * <element name="max12">
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}region"/>
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max13">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max21">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max22">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max23">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max31">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max32">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </element>
+ * <element name="max33">
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
* </restriction>
* </complexContent>
* </complexType>
* </element>
* </sequence>
- * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}dbRef"/>
- * <attribute name="objectVersion" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="intObjectId" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="type" type="{http://www.w3.org/2001/XMLSchema}string" />
* </restriction>
* </complexContent>
* </complexType>
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "alignObjectDetail",
- "sequence"
- })
- public static class AlignObject {
-
- protected List<Alignment.AlignObject.AlignObjectDetail> alignObjectDetail;
- protected Alignment.AlignObject.Sequence sequence;
- @XmlAttribute(name = "objectVersion", required = true)
- protected String objectVersion;
- @XmlAttribute(name = "intObjectId", required = true)
- protected String intObjectId;
- @XmlAttribute(name = "type")
- protected String type;
- @XmlAttribute(name = "dbSource", required = true)
- protected String dbSource;
- @XmlAttribute(name = "dbCoordSys", required = true)
- protected String dbCoordSys;
- @XmlAttribute(name = "dbAccessionId", required = true)
- protected String dbAccessionId;
- @XmlAttribute(name = "dbEvidence")
- protected String dbEvidence;
- @XmlAttribute(name = "dbVersion")
- protected String dbVersion;
+ @XmlType(
+ name = "",
+ propOrder =
+ { "max11", "max12", "max13", "max21", "max22", "max23", "max31",
+ "max32", "max33" })
+ public static class Matrix
+ {
+
+ @XmlElement(required = true)
+ protected Alignment.Geo3D.Matrix.Max11 max11;
+
+ @XmlElement(required = true)
+ protected Alignment.Geo3D.Matrix.Max12 max12;
+
+ @XmlElement(required = true)
+ protected Alignment.Geo3D.Matrix.Max13 max13;
+
+ @XmlElement(required = true)
+ protected Alignment.Geo3D.Matrix.Max21 max21;
+
+ @XmlElement(required = true)
+ protected Alignment.Geo3D.Matrix.Max22 max22;
+
+ @XmlElement(required = true)
+ protected Alignment.Geo3D.Matrix.Max23 max23;
+
+ @XmlElement(required = true)
+ protected Alignment.Geo3D.Matrix.Max31 max31;
+
+ @XmlElement(required = true)
+ protected Alignment.Geo3D.Matrix.Max32 max32;
+
+ @XmlElement(required = true)
+ protected Alignment.Geo3D.Matrix.Max33 max33;
+
+ /**
+ * Gets the value of the max11 property.
+ *
+ * @return possible object is {@link Alignment.Geo3D.Matrix.Max11 }
+ *
+ */
+ public Alignment.Geo3D.Matrix.Max11 getMax11()
+ {
+ return max11;
+ }
+
+ /**
+ * Sets the value of the max11 property.
+ *
+ * @param value
+ * allowed object is {@link Alignment.Geo3D.Matrix.Max11 }
+ *
+ */
+ public void setMax11(Alignment.Geo3D.Matrix.Max11 value)
+ {
+ this.max11 = value;
+ }
+
+ /**
+ * Gets the value of the max12 property.
+ *
+ * @return possible object is {@link Alignment.Geo3D.Matrix.Max12 }
+ *
+ */
+ public Alignment.Geo3D.Matrix.Max12 getMax12()
+ {
+ return max12;
+ }
+
+ /**
+ * Sets the value of the max12 property.
+ *
+ * @param value
+ * allowed object is {@link Alignment.Geo3D.Matrix.Max12 }
+ *
+ */
+ public void setMax12(Alignment.Geo3D.Matrix.Max12 value)
+ {
+ this.max12 = value;
+ }
+
+ /**
+ * Gets the value of the max13 property.
+ *
+ * @return possible object is {@link Alignment.Geo3D.Matrix.Max13 }
+ *
+ */
+ public Alignment.Geo3D.Matrix.Max13 getMax13()
+ {
+ return max13;
+ }
+
+ /**
+ * Sets the value of the max13 property.
+ *
+ * @param value
+ * allowed object is {@link Alignment.Geo3D.Matrix.Max13 }
+ *
+ */
+ public void setMax13(Alignment.Geo3D.Matrix.Max13 value)
+ {
+ this.max13 = value;
+ }
+
+ /**
+ * Gets the value of the max21 property.
+ *
+ * @return possible object is {@link Alignment.Geo3D.Matrix.Max21 }
+ *
+ */
+ public Alignment.Geo3D.Matrix.Max21 getMax21()
+ {
+ return max21;
+ }
+
+ /**
+ * Sets the value of the max21 property.
+ *
+ * @param value
+ * allowed object is {@link Alignment.Geo3D.Matrix.Max21 }
+ *
+ */
+ public void setMax21(Alignment.Geo3D.Matrix.Max21 value)
+ {
+ this.max21 = value;
+ }
+
+ /**
+ * Gets the value of the max22 property.
+ *
+ * @return possible object is {@link Alignment.Geo3D.Matrix.Max22 }
+ *
+ */
+ public Alignment.Geo3D.Matrix.Max22 getMax22()
+ {
+ return max22;
+ }
+
+ /**
+ * Sets the value of the max22 property.
+ *
+ * @param value
+ * allowed object is {@link Alignment.Geo3D.Matrix.Max22 }
+ *
+ */
+ public void setMax22(Alignment.Geo3D.Matrix.Max22 value)
+ {
+ this.max22 = value;
+ }
+
+ /**
+ * Gets the value of the max23 property.
+ *
+ * @return possible object is {@link Alignment.Geo3D.Matrix.Max23 }
+ *
+ */
+ public Alignment.Geo3D.Matrix.Max23 getMax23()
+ {
+ return max23;
+ }
+
+ /**
+ * Sets the value of the max23 property.
+ *
+ * @param value
+ * allowed object is {@link Alignment.Geo3D.Matrix.Max23 }
+ *
+ */
+ public void setMax23(Alignment.Geo3D.Matrix.Max23 value)
+ {
+ this.max23 = value;
+ }
+
+ /**
+ * Gets the value of the max31 property.
+ *
+ * @return possible object is {@link Alignment.Geo3D.Matrix.Max31 }
+ *
+ */
+ public Alignment.Geo3D.Matrix.Max31 getMax31()
+ {
+ return max31;
+ }
+
+ /**
+ * Sets the value of the max31 property.
+ *
+ * @param value
+ * allowed object is {@link Alignment.Geo3D.Matrix.Max31 }
+ *
+ */
+ public void setMax31(Alignment.Geo3D.Matrix.Max31 value)
+ {
+ this.max31 = value;
+ }
+
+ /**
+ * Gets the value of the max32 property.
+ *
+ * @return possible object is {@link Alignment.Geo3D.Matrix.Max32 }
+ *
+ */
+ public Alignment.Geo3D.Matrix.Max32 getMax32()
+ {
+ return max32;
+ }
+
+ /**
+ * Sets the value of the max32 property.
+ *
+ * @param value
+ * allowed object is {@link Alignment.Geo3D.Matrix.Max32 }
+ *
+ */
+ public void setMax32(Alignment.Geo3D.Matrix.Max32 value)
+ {
+ this.max32 = value;
+ }
+
+ /**
+ * Gets the value of the max33 property.
+ *
+ * @return possible object is {@link Alignment.Geo3D.Matrix.Max33 }
+ *
+ */
+ public Alignment.Geo3D.Matrix.Max33 getMax33()
+ {
+ return max33;
+ }
+
+ /**
+ * Sets the value of the max33 property.
+ *
+ * @param value
+ * allowed object is {@link Alignment.Geo3D.Matrix.Max33 }
+ *
+ */
+ public void setMax33(Alignment.Geo3D.Matrix.Max33 value)
+ {
+ this.max33 = value;
+ }
+
+ /**
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Max11
+ {
+
+ @XmlAttribute(name = "coord", required = true)
+ protected float coord;
/**
- * Gets the value of the alignObjectDetail property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the alignObjectDetail property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getAlignObjectDetail().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link Alignment.AlignObject.AlignObjectDetail }
- *
+ * Gets the value of the coord property.
*
*/
- public List<Alignment.AlignObject.AlignObjectDetail> getAlignObjectDetail() {
- if (alignObjectDetail == null) {
- alignObjectDetail = new ArrayList<Alignment.AlignObject.AlignObjectDetail>();
- }
- return this.alignObjectDetail;
+ public float getCoord()
+ {
+ return coord;
}
/**
- * Gets the value of the sequence property.
+ * Sets the value of the coord property.
*
- * @return
- * possible object is
- * {@link Alignment.AlignObject.Sequence }
- *
*/
- public Alignment.AlignObject.Sequence getSequence() {
- return sequence;
+ public void setCoord(float value)
+ {
+ this.coord = value;
}
- /**
- * Sets the value of the sequence property.
- *
- * @param value
- * allowed object is
- * {@link Alignment.AlignObject.Sequence }
- *
- */
- public void setSequence(Alignment.AlignObject.Sequence value) {
- this.sequence = value;
- }
+ }
+
+ /**
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Max12
+ {
+
+ @XmlAttribute(name = "coord", required = true)
+ protected float coord;
/**
- * Gets the value of the objectVersion property.
+ * Gets the value of the coord property.
*
- * @return
- * possible object is
- * {@link String }
- *
*/
- public String getObjectVersion() {
- return objectVersion;
+ public float getCoord()
+ {
+ return coord;
}
/**
- * Sets the value of the objectVersion property.
+ * Sets the value of the coord property.
*
- * @param value
- * allowed object is
- * {@link String }
- *
*/
- public void setObjectVersion(String value) {
- this.objectVersion = value;
+ public void setCoord(float value)
+ {
+ this.coord = value;
}
- /**
- * Gets the value of the intObjectId property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getIntObjectId() {
- return intObjectId;
- }
+ }
+
+ /**
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Max13
+ {
+
+ @XmlAttribute(name = "coord", required = true)
+ protected float coord;
/**
- * Sets the value of the intObjectId property.
+ * Gets the value of the coord property.
*
- * @param value
- * allowed object is
- * {@link String }
- *
*/
- public void setIntObjectId(String value) {
- this.intObjectId = value;
+ public float getCoord()
+ {
+ return coord;
}
/**
- * Gets the value of the type property.
+ * Sets the value of the coord property.
*
- * @return
- * possible object is
- * {@link String }
- *
*/
- public String getType() {
- return type;
+ public void setCoord(float value)
+ {
+ this.coord = value;
}
- /**
- * Sets the value of the type property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setType(String value) {
- this.type = value;
- }
+ }
+
+ /**
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Max21
+ {
+
+ @XmlAttribute(name = "coord", required = true)
+ protected float coord;
/**
- * Gets the value of the dbSource property.
+ * Gets the value of the coord property.
*
- * @return
- * possible object is
- * {@link String }
- *
*/
- public String getDbSource() {
- return dbSource;
+ public float getCoord()
+ {
+ return coord;
}
/**
- * Sets the value of the dbSource property.
+ * Sets the value of the coord property.
*
- * @param value
- * allowed object is
- * {@link String }
- *
*/
- public void setDbSource(String value) {
- this.dbSource = value;
+ public void setCoord(float value)
+ {
+ this.coord = value;
}
+ }
+
+ /**
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Max22
+ {
+
+ @XmlAttribute(name = "coord", required = true)
+ protected float coord;
+
/**
- * Gets the value of the dbCoordSys property.
+ * Gets the value of the coord property.
*
- * @return
- * possible object is
- * {@link String }
- *
*/
- public String getDbCoordSys() {
- return dbCoordSys;
+ public float getCoord()
+ {
+ return coord;
}
/**
- * Sets the value of the dbCoordSys property.
+ * Sets the value of the coord property.
*
- * @param value
- * allowed object is
- * {@link String }
- *
*/
- public void setDbCoordSys(String value) {
- this.dbCoordSys = value;
+ public void setCoord(float value)
+ {
+ this.coord = value;
}
+ }
+
+ /**
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Max23
+ {
+
+ @XmlAttribute(name = "coord", required = true)
+ protected float coord;
+
/**
- * Gets the value of the dbAccessionId property.
+ * Gets the value of the coord property.
*
- * @return
- * possible object is
- * {@link String }
- *
*/
- public String getDbAccessionId() {
- return dbAccessionId;
+ public float getCoord()
+ {
+ return coord;
}
/**
- * Sets the value of the dbAccessionId property.
+ * Sets the value of the coord property.
*
- * @param value
- * allowed object is
- * {@link String }
- *
*/
- public void setDbAccessionId(String value) {
- this.dbAccessionId = value;
+ public void setCoord(float value)
+ {
+ this.coord = value;
}
+ }
+
+ /**
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Max31
+ {
+
+ @XmlAttribute(name = "coord", required = true)
+ protected float coord;
+
/**
- * Gets the value of the dbEvidence property.
+ * Gets the value of the coord property.
*
- * @return
- * possible object is
- * {@link String }
- *
*/
- public String getDbEvidence() {
- return dbEvidence;
+ public float getCoord()
+ {
+ return coord;
}
/**
- * Sets the value of the dbEvidence property.
+ * Sets the value of the coord property.
*
- * @param value
- * allowed object is
- * {@link String }
- *
*/
- public void setDbEvidence(String value) {
- this.dbEvidence = value;
+ public void setCoord(float value)
+ {
+ this.coord = value;
}
+ }
+
+ /**
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Max32
+ {
+
+ @XmlAttribute(name = "coord", required = true)
+ protected float coord;
+
/**
- * Gets the value of the dbVersion property.
+ * Gets the value of the coord property.
*
- * @return
- * possible object is
- * {@link String }
- *
*/
- public String getDbVersion() {
- return dbVersion;
+ public float getCoord()
+ {
+ return coord;
}
/**
- * Sets the value of the dbVersion property.
+ * Sets the value of the coord property.
*
- * @param value
- * allowed object is
- * {@link String }
- *
*/
- public void setDbVersion(String value) {
- this.dbVersion = value;
+ public void setCoord(float value)
+ {
+ this.coord = value;
}
+ }
+
+ /**
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Max33
+ {
+
+ @XmlAttribute(name = "coord", required = true)
+ protected float coord;
/**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}detail"/>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
- *
+ * Gets the value of the coord property.
*
*/
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "content"
- })
- public static class AlignObjectDetail {
-
- @XmlValue
- protected String content;
- @XmlAttribute(name = "dbSource")
- protected String dbSource;
- @XmlAttribute(name = "property", required = true)
- protected String property;
-
- /**
- * Gets the value of the content property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getContent() {
- return content;
- }
-
- /**
- * Sets the value of the content property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setContent(String value) {
- this.content = value;
- }
-
- /**
- * Gets the value of the dbSource property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getDbSource() {
- return dbSource;
- }
-
- /**
- * Sets the value of the dbSource property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setDbSource(String value) {
- this.dbSource = value;
- }
-
- /**
- * Gets the value of the property property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getProperty() {
- return property;
- }
-
- /**
- * Sets the value of the property property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setProperty(String value) {
- this.property = value;
- }
-
+ public float getCoord()
+ {
+ return coord;
}
-
/**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}region"/>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
- *
+ * Sets the value of the coord property.
*
*/
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "content"
- })
- public static class Sequence {
-
- @XmlValue
- protected String content;
- @XmlAttribute(name = "start")
- protected String start;
- @XmlAttribute(name = "end")
- protected String end;
-
- /**
- * Gets the value of the content property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getContent() {
- return content;
- }
-
- /**
- * Sets the value of the content property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setContent(String value) {
- this.content = value;
- }
-
- /**
- * Gets the value of the start property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getStart() {
- return start;
- }
-
- /**
- * Sets the value of the start property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setStart(String value) {
- this.start = value;
- }
-
- /**
- * Gets the value of the end property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getEnd() {
- return end;
- }
-
- /**
- * Sets the value of the end property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setEnd(String value) {
- this.end = value;
- }
-
+ public void setCoord(float value)
+ {
+ this.coord = value;
}
- }
+ }
+ }
/**
- * <p>Java class for anonymous complex type.
+ * <p>
+ * Java class for anonymous complex type.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
*
* <pre>
* <complexType>
* <complexContent>
* <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="segment" maxOccurs="unbounded">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence minOccurs="0">
- * <element name="cigar" type="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}cigarstring"/>
- * </sequence>
- * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}region"/>
- * <attribute name="intObjectId" use="required" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
- * <attribute name="strand" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * <attribute name="blockScore" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="blockOrder" use="required" type="{http://www.w3.org/2001/XMLSchema}integer" />
+ * <attribute name="x" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * <attribute name="y" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
+ * <attribute name="z" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
* </restriction>
* </complexContent>
* </complexType>
*
*/
@XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "segment"
- })
- public static class Block {
-
- @XmlElement(required = true)
- protected List<Alignment.Block.Segment> segment;
- @XmlAttribute(name = "blockScore")
- protected String blockScore;
- @XmlAttribute(name = "blockOrder", required = true)
- protected BigInteger blockOrder;
-
- /**
- * Gets the value of the segment property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the segment property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getSegment().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link Alignment.Block.Segment }
- *
- *
- */
- public List<Alignment.Block.Segment> getSegment() {
- if (segment == null) {
- segment = new ArrayList<Alignment.Block.Segment>();
- }
- return this.segment;
- }
-
- /**
- * Gets the value of the blockScore property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getBlockScore() {
- return blockScore;
- }
-
- /**
- * Sets the value of the blockScore property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setBlockScore(String value) {
- this.blockScore = value;
- }
-
- /**
- * Gets the value of the blockOrder property.
- *
- * @return
- * possible object is
- * {@link BigInteger }
- *
- */
- public BigInteger getBlockOrder() {
- return blockOrder;
- }
-
- /**
- * Sets the value of the blockOrder property.
- *
- * @param value
- * allowed object is
- * {@link BigInteger }
- *
- */
- public void setBlockOrder(BigInteger value) {
- this.blockOrder = value;
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence minOccurs="0">
- * <element name="cigar" type="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}cigarstring"/>
- * </sequence>
- * <attGroup ref="{http://www.ebi.ac.uk/pdbe/docs/sifts/dataTypes.xsd}region"/>
- * <attribute name="intObjectId" use="required" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
- * <attribute name="strand" type="{http://www.w3.org/2001/XMLSchema}anySimpleType" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "cigar"
- })
- public static class Segment {
-
- protected String cigar;
- @XmlAttribute(name = "intObjectId", required = true)
- @XmlSchemaType(name = "anySimpleType")
- protected String intObjectId;
- @XmlAttribute(name = "strand")
- @XmlSchemaType(name = "anySimpleType")
- protected String strand;
- @XmlAttribute(name = "start")
- protected String start;
- @XmlAttribute(name = "end")
- protected String end;
-
- /**
- * Gets the value of the cigar property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getCigar() {
- return cigar;
- }
-
- /**
- * Sets the value of the cigar property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setCigar(String value) {
- this.cigar = value;
- }
-
- /**
- * Gets the value of the intObjectId property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getIntObjectId() {
- return intObjectId;
- }
-
- /**
- * Sets the value of the intObjectId property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setIntObjectId(String value) {
- this.intObjectId = value;
- }
-
- /**
- * Gets the value of the strand property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getStrand() {
- return strand;
- }
-
- /**
- * Sets the value of the strand property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setStrand(String value) {
- this.strand = value;
- }
-
- /**
- * Gets the value of the start property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getStart() {
- return start;
- }
-
- /**
- * Sets the value of the start property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setStart(String value) {
- this.start = value;
- }
-
- /**
- * Gets the value of the end property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getEnd() {
- return end;
- }
-
- /**
- * Sets the value of the end property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setEnd(String value) {
- this.end = value;
- }
-
- }
+ @XmlType(name = "")
+ public static class Vector
+ {
+
+ @XmlAttribute(name = "x", required = true)
+ protected float x;
+
+ @XmlAttribute(name = "y", required = true)
+ protected float y;
+
+ @XmlAttribute(name = "z", required = true)
+ protected float z;
+
+ /**
+ * Gets the value of the x property.
+ *
+ */
+ public float getX()
+ {
+ return x;
+ }
+
+ /**
+ * Sets the value of the x property.
+ *
+ */
+ public void setX(float value)
+ {
+ this.x = value;
+ }
+
+ /**
+ * Gets the value of the y property.
+ *
+ */
+ public float getY()
+ {
+ return y;
+ }
+
+ /**
+ * Sets the value of the y property.
+ *
+ */
+ public void setY(float value)
+ {
+ this.y = value;
+ }
+
+ /**
+ * Gets the value of the z property.
+ *
+ */
+ public float getZ()
+ {
+ return z;
+ }
+
+ /**
+ * Sets the value of the z property.
+ *
+ */
+ public void setZ(float value)
+ {
+ this.z = value;
+ }
}
+ }
+
+ /**
+ * <p>
+ * Java class for anonymous complex type.
+ *
+ * <p>
+ * The following schema fragment specifies the expected content contained
+ * within this class.
+ *
+ * <pre>
+ * <complexType>
+ * <complexContent>
+ * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ * <attribute name="methodName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * <attribute name="scoreValue" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ * </restriction>
+ * </complexContent>
+ * </complexType>
+ * </pre>
+ *
+ *
+ */
+ @XmlAccessorType(XmlAccessType.FIELD)
+ @XmlType(name = "")
+ public static class Score
+ {
+
+ @XmlAttribute(name = "methodName", required = true)
+ protected String methodName;
+
+ @XmlAttribute(name = "scoreValue", required = true)
+ protected String scoreValue;
/**
- * <p>Java class for anonymous complex type.
+ * Gets the value of the methodName property.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * @return possible object is {@link String }
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="vector">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="x" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * <attribute name="y" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * <attribute name="z" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="matrix" maxOccurs="unbounded">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="max11">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="max12">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="max13">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="max21">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="max22">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="max23">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="max31">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="max32">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="max33">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * <attribute name="intObjectId" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ */
+ public String getMethodName()
+ {
+ return methodName;
+ }
+
+ /**
+ * Sets the value of the methodName property.
*
+ * @param value
+ * allowed object is {@link String }
*
*/
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "vector",
- "matrix"
- })
- public static class Geo3D {
-
- @XmlElement(required = true)
- protected Alignment.Geo3D.Vector vector;
- @XmlElement(required = true)
- protected List<Alignment.Geo3D.Matrix> matrix;
- @XmlAttribute(name = "intObjectId", required = true)
- protected String intObjectId;
-
- /**
- * Gets the value of the vector property.
- *
- * @return
- * possible object is
- * {@link Alignment.Geo3D.Vector }
- *
- */
- public Alignment.Geo3D.Vector getVector() {
- return vector;
- }
-
- /**
- * Sets the value of the vector property.
- *
- * @param value
- * allowed object is
- * {@link Alignment.Geo3D.Vector }
- *
- */
- public void setVector(Alignment.Geo3D.Vector value) {
- this.vector = value;
- }
-
- /**
- * Gets the value of the matrix property.
- *
- * <p>
- * This accessor method returns a reference to the live list,
- * not a snapshot. Therefore any modification you make to the
- * returned list will be present inside the JAXB object.
- * This is why there is not a <CODE>set</CODE> method for the matrix property.
- *
- * <p>
- * For example, to add a new item, do as follows:
- * <pre>
- * getMatrix().add(newItem);
- * </pre>
- *
- *
- * <p>
- * Objects of the following type(s) are allowed in the list
- * {@link Alignment.Geo3D.Matrix }
- *
- *
- */
- public List<Alignment.Geo3D.Matrix> getMatrix() {
- if (matrix == null) {
- matrix = new ArrayList<Alignment.Geo3D.Matrix>();
- }
- return this.matrix;
- }
-
- /**
- * Gets the value of the intObjectId property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getIntObjectId() {
- return intObjectId;
- }
-
- /**
- * Sets the value of the intObjectId property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setIntObjectId(String value) {
- this.intObjectId = value;
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <sequence>
- * <element name="max11">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="max12">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="max13">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="max21">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="max22">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="max23">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="max31">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="max32">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * <element name="max33">
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </element>
- * </sequence>
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "", propOrder = {
- "max11",
- "max12",
- "max13",
- "max21",
- "max22",
- "max23",
- "max31",
- "max32",
- "max33"
- })
- public static class Matrix {
-
- @XmlElement(required = true)
- protected Alignment.Geo3D.Matrix.Max11 max11;
- @XmlElement(required = true)
- protected Alignment.Geo3D.Matrix.Max12 max12;
- @XmlElement(required = true)
- protected Alignment.Geo3D.Matrix.Max13 max13;
- @XmlElement(required = true)
- protected Alignment.Geo3D.Matrix.Max21 max21;
- @XmlElement(required = true)
- protected Alignment.Geo3D.Matrix.Max22 max22;
- @XmlElement(required = true)
- protected Alignment.Geo3D.Matrix.Max23 max23;
- @XmlElement(required = true)
- protected Alignment.Geo3D.Matrix.Max31 max31;
- @XmlElement(required = true)
- protected Alignment.Geo3D.Matrix.Max32 max32;
- @XmlElement(required = true)
- protected Alignment.Geo3D.Matrix.Max33 max33;
-
- /**
- * Gets the value of the max11 property.
- *
- * @return
- * possible object is
- * {@link Alignment.Geo3D.Matrix.Max11 }
- *
- */
- public Alignment.Geo3D.Matrix.Max11 getMax11() {
- return max11;
- }
-
- /**
- * Sets the value of the max11 property.
- *
- * @param value
- * allowed object is
- * {@link Alignment.Geo3D.Matrix.Max11 }
- *
- */
- public void setMax11(Alignment.Geo3D.Matrix.Max11 value) {
- this.max11 = value;
- }
-
- /**
- * Gets the value of the max12 property.
- *
- * @return
- * possible object is
- * {@link Alignment.Geo3D.Matrix.Max12 }
- *
- */
- public Alignment.Geo3D.Matrix.Max12 getMax12() {
- return max12;
- }
-
- /**
- * Sets the value of the max12 property.
- *
- * @param value
- * allowed object is
- * {@link Alignment.Geo3D.Matrix.Max12 }
- *
- */
- public void setMax12(Alignment.Geo3D.Matrix.Max12 value) {
- this.max12 = value;
- }
-
- /**
- * Gets the value of the max13 property.
- *
- * @return
- * possible object is
- * {@link Alignment.Geo3D.Matrix.Max13 }
- *
- */
- public Alignment.Geo3D.Matrix.Max13 getMax13() {
- return max13;
- }
-
- /**
- * Sets the value of the max13 property.
- *
- * @param value
- * allowed object is
- * {@link Alignment.Geo3D.Matrix.Max13 }
- *
- */
- public void setMax13(Alignment.Geo3D.Matrix.Max13 value) {
- this.max13 = value;
- }
-
- /**
- * Gets the value of the max21 property.
- *
- * @return
- * possible object is
- * {@link Alignment.Geo3D.Matrix.Max21 }
- *
- */
- public Alignment.Geo3D.Matrix.Max21 getMax21() {
- return max21;
- }
-
- /**
- * Sets the value of the max21 property.
- *
- * @param value
- * allowed object is
- * {@link Alignment.Geo3D.Matrix.Max21 }
- *
- */
- public void setMax21(Alignment.Geo3D.Matrix.Max21 value) {
- this.max21 = value;
- }
-
- /**
- * Gets the value of the max22 property.
- *
- * @return
- * possible object is
- * {@link Alignment.Geo3D.Matrix.Max22 }
- *
- */
- public Alignment.Geo3D.Matrix.Max22 getMax22() {
- return max22;
- }
-
- /**
- * Sets the value of the max22 property.
- *
- * @param value
- * allowed object is
- * {@link Alignment.Geo3D.Matrix.Max22 }
- *
- */
- public void setMax22(Alignment.Geo3D.Matrix.Max22 value) {
- this.max22 = value;
- }
-
- /**
- * Gets the value of the max23 property.
- *
- * @return
- * possible object is
- * {@link Alignment.Geo3D.Matrix.Max23 }
- *
- */
- public Alignment.Geo3D.Matrix.Max23 getMax23() {
- return max23;
- }
-
- /**
- * Sets the value of the max23 property.
- *
- * @param value
- * allowed object is
- * {@link Alignment.Geo3D.Matrix.Max23 }
- *
- */
- public void setMax23(Alignment.Geo3D.Matrix.Max23 value) {
- this.max23 = value;
- }
-
- /**
- * Gets the value of the max31 property.
- *
- * @return
- * possible object is
- * {@link Alignment.Geo3D.Matrix.Max31 }
- *
- */
- public Alignment.Geo3D.Matrix.Max31 getMax31() {
- return max31;
- }
-
- /**
- * Sets the value of the max31 property.
- *
- * @param value
- * allowed object is
- * {@link Alignment.Geo3D.Matrix.Max31 }
- *
- */
- public void setMax31(Alignment.Geo3D.Matrix.Max31 value) {
- this.max31 = value;
- }
-
- /**
- * Gets the value of the max32 property.
- *
- * @return
- * possible object is
- * {@link Alignment.Geo3D.Matrix.Max32 }
- *
- */
- public Alignment.Geo3D.Matrix.Max32 getMax32() {
- return max32;
- }
-
- /**
- * Sets the value of the max32 property.
- *
- * @param value
- * allowed object is
- * {@link Alignment.Geo3D.Matrix.Max32 }
- *
- */
- public void setMax32(Alignment.Geo3D.Matrix.Max32 value) {
- this.max32 = value;
- }
-
- /**
- * Gets the value of the max33 property.
- *
- * @return
- * possible object is
- * {@link Alignment.Geo3D.Matrix.Max33 }
- *
- */
- public Alignment.Geo3D.Matrix.Max33 getMax33() {
- return max33;
- }
-
- /**
- * Sets the value of the max33 property.
- *
- * @param value
- * allowed object is
- * {@link Alignment.Geo3D.Matrix.Max33 }
- *
- */
- public void setMax33(Alignment.Geo3D.Matrix.Max33 value) {
- this.max33 = value;
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "")
- public static class Max11 {
-
- @XmlAttribute(name = "coord", required = true)
- protected float coord;
-
- /**
- * Gets the value of the coord property.
- *
- */
- public float getCoord() {
- return coord;
- }
-
- /**
- * Sets the value of the coord property.
- *
- */
- public void setCoord(float value) {
- this.coord = value;
- }
-
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "")
- public static class Max12 {
-
- @XmlAttribute(name = "coord", required = true)
- protected float coord;
-
- /**
- * Gets the value of the coord property.
- *
- */
- public float getCoord() {
- return coord;
- }
-
- /**
- * Sets the value of the coord property.
- *
- */
- public void setCoord(float value) {
- this.coord = value;
- }
-
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "")
- public static class Max13 {
-
- @XmlAttribute(name = "coord", required = true)
- protected float coord;
-
- /**
- * Gets the value of the coord property.
- *
- */
- public float getCoord() {
- return coord;
- }
-
- /**
- * Sets the value of the coord property.
- *
- */
- public void setCoord(float value) {
- this.coord = value;
- }
-
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "")
- public static class Max21 {
-
- @XmlAttribute(name = "coord", required = true)
- protected float coord;
-
- /**
- * Gets the value of the coord property.
- *
- */
- public float getCoord() {
- return coord;
- }
-
- /**
- * Sets the value of the coord property.
- *
- */
- public void setCoord(float value) {
- this.coord = value;
- }
-
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "")
- public static class Max22 {
-
- @XmlAttribute(name = "coord", required = true)
- protected float coord;
-
- /**
- * Gets the value of the coord property.
- *
- */
- public float getCoord() {
- return coord;
- }
-
- /**
- * Sets the value of the coord property.
- *
- */
- public void setCoord(float value) {
- this.coord = value;
- }
-
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "")
- public static class Max23 {
-
- @XmlAttribute(name = "coord", required = true)
- protected float coord;
-
- /**
- * Gets the value of the coord property.
- *
- */
- public float getCoord() {
- return coord;
- }
-
- /**
- * Sets the value of the coord property.
- *
- */
- public void setCoord(float value) {
- this.coord = value;
- }
-
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "")
- public static class Max31 {
-
- @XmlAttribute(name = "coord", required = true)
- protected float coord;
-
- /**
- * Gets the value of the coord property.
- *
- */
- public float getCoord() {
- return coord;
- }
-
- /**
- * Sets the value of the coord property.
- *
- */
- public void setCoord(float value) {
- this.coord = value;
- }
-
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "")
- public static class Max32 {
-
- @XmlAttribute(name = "coord", required = true)
- protected float coord;
-
- /**
- * Gets the value of the coord property.
- *
- */
- public float getCoord() {
- return coord;
- }
-
- /**
- * Sets the value of the coord property.
- *
- */
- public void setCoord(float value) {
- this.coord = value;
- }
-
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="coord" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "")
- public static class Max33 {
-
- @XmlAttribute(name = "coord", required = true)
- protected float coord;
-
- /**
- * Gets the value of the coord property.
- *
- */
- public float getCoord() {
- return coord;
- }
-
- /**
- * Sets the value of the coord property.
- *
- */
- public void setCoord(float value) {
- this.coord = value;
- }
-
- }
-
- }
-
-
- /**
- * <p>Java class for anonymous complex type.
- *
- * <p>The following schema fragment specifies the expected content contained within this class.
- *
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="x" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * <attribute name="y" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * <attribute name="z" use="required" type="{http://www.w3.org/2001/XMLSchema}float" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
- *
- *
- */
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "")
- public static class Vector {
-
- @XmlAttribute(name = "x", required = true)
- protected float x;
- @XmlAttribute(name = "y", required = true)
- protected float y;
- @XmlAttribute(name = "z", required = true)
- protected float z;
-
- /**
- * Gets the value of the x property.
- *
- */
- public float getX() {
- return x;
- }
-
- /**
- * Sets the value of the x property.
- *
- */
- public void setX(float value) {
- this.x = value;
- }
-
- /**
- * Gets the value of the y property.
- *
- */
- public float getY() {
- return y;
- }
-
- /**
- * Sets the value of the y property.
- *
- */
- public void setY(float value) {
- this.y = value;
- }
-
- /**
- * Gets the value of the z property.
- *
- */
- public float getZ() {
- return z;
- }
-
- /**
- * Sets the value of the z property.
- *
- */
- public void setZ(float value) {
- this.z = value;
- }
-
- }
-
+ public void setMethodName(String value)
+ {
+ this.methodName = value;
}
-
/**
- * <p>Java class for anonymous complex type.
+ * Gets the value of the scoreValue property.
*
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * @return possible object is {@link String }
*
- * <pre>
- * <complexType>
- * <complexContent>
- * <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- * <attribute name="methodName" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * <attribute name="scoreValue" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
- * </restriction>
- * </complexContent>
- * </complexType>
- * </pre>
+ */
+ public String getScoreValue()
+ {
+ return scoreValue;
+ }
+
+ /**
+ * Sets the value of the scoreValue property.
*
+ * @param value
+ * allowed object is {@link String }
*
*/
- @XmlAccessorType(XmlAccessType.FIELD)
- @XmlType(name = "")
- public static class Score {
-
- @XmlAttribute(name = "methodName", required = true)
- protected String methodName;
- @XmlAttribute(name = "scoreValue", required = true)
- protected String scoreValue;
-
- /**
- * Gets the value of the methodName property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getMethodName() {
- return methodName;
- }
-
- /**
- * Sets the value of the methodName property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setMethodName(String value) {
- this.methodName = value;
- }
-
- /**
- * Gets the value of the scoreValue property.
- *
- * @return
- * possible object is
- * {@link String }
- *
- */
- public String getScoreValue() {
- return scoreValue;
- }
-
- /**
- * Sets the value of the scoreValue property.
- *
- * @param value
- * allowed object is
- * {@link String }
- *
- */
- public void setScoreValue(String value) {
- this.scoreValue = value;
- }
-
+ public void setScoreValue(String value)
+ {
+ this.scoreValue = value;
}
+ }
+
}
git://source.jalview.org / jalview.git / blobdiff