JAL-2305 comments re testFindXrefSequences_withFetch is failing - looks like test...

[jalview.git] / test / jalview / analysis / CrossRefTest.java

diff --git a/test/jalview/analysis/CrossRefTest.java b/test/jalview/analysis/CrossRefTest.java
index 2ca112f..4bd38d2 100644 (file)
--- a/test/jalview/analysis/CrossRefTest.java
+++ b/test/jalview/analysis/CrossRefTest.java
@@ -415,15 +415,19 @@ public class CrossRefTest
   @Test(groups = { "Functional_Failing" })
   public void testFindXrefSequences_withFetch()
   {
+    // JBPNote: this fails because pep1 and pep2 do not have DbRefEntrys with mappings
+    // Fix#1 would be to revise the test data so it fits with 2.11.2+ Jalview assumptions
+    // that ENA retrievals yield dbrefs with Mappings
+    
     SequenceI dna1 = new Sequence("AF039662", "GGGGCAGCACAAGAAC");
     dna1.addDBRef(new DBRefEntry("UNIPROT", "ENA:0", "Q9ZTS2"));
     dna1.addDBRef(new DBRefEntry("UNIPROT", "ENA:0", "P30419"));
     dna1.addDBRef(new DBRefEntry("UNIPROT", "ENA:0", "P00314"));
     final SequenceI pep1 = new Sequence("Q9ZTS2", "MYQLIRSSW");
-    pep1.addDBRef(new DBRefEntry("UNIPROT", "0", "Q9ZTS2"));
+    pep1.addDBRef(new DBRefEntry("UNIPROT", "0", "Q9ZTS2",null,true));
 
     final SequenceI pep2 = new Sequence("P00314", "MRKLLAASG");
-    pep2.addDBRef(new DBRefEntry("UNIPROT", "0", "P00314"));
+    pep2.addDBRef(new DBRefEntry("UNIPROT", "0", "P00314",null,true));
 
     /*
      * argument false suppresses adding DAS sources