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JAL-1805 test envirionment separation
[jalview.git] / test / jalview / gui / PopupMenuTest.java
diff --git a/test/jalview/gui/PopupMenuTest.java b/test/jalview/gui/PopupMenuTest.java
index f7b1482..f984dfc 100644 (file)
--- a/test/jalview/gui/PopupMenuTest.java
+++ b/test/jalview/gui/PopupMenuTest.java
@@ -1,14 +1,15 @@
 package jalview.gui;
 
-import static org.junit.Assert.assertEquals;
-import static org.junit.Assert.assertFalse;
-import static org.junit.Assert.assertTrue;
+import static org.testng.AssertJUnit.assertEquals;
+import static org.testng.AssertJUnit.assertFalse;
+import static org.testng.AssertJUnit.assertTrue;
+
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
+import jalview.datamodel.Annotation;
 import jalview.datamodel.SequenceI;
 import jalview.io.AppletFormatAdapter;
 import jalview.io.FormatAdapter;
-import jalview.util.MessageManager;
 
 import java.awt.Component;
 import java.io.IOException;
@@ -20,8 +21,8 @@ import javax.swing.JMenuItem;
 import javax.swing.JPopupMenu;
 import javax.swing.JSeparator;
 
-import org.junit.Before;
-import org.junit.Test;
+import org.testng.annotations.BeforeMethod;
+import org.testng.annotations.Test;
 
 public class PopupMenuTest
 {
@@ -40,7 +41,7 @@ public class PopupMenuTest
 
   PopupMenu testee = null;
 
-  @Before
+  @BeforeMethod
   public void setUp() throws IOException
   {
     alignment = new FormatAdapter().readFile(TEST_DATA,
@@ -59,19 +60,16 @@ public class PopupMenuTest
     }
   }
 
-  @Test
+  @Test(groups ={ "Functional" })
   public void testConfigureReferenceAnnotationsMenu_noSequenceSelected()
   {
     JMenuItem menu = new JMenuItem();
     List<SequenceI> seqs = new ArrayList<SequenceI>();
     testee.configureReferenceAnnotationsMenu(menu, seqs);
     assertFalse(menu.isEnabled());
-    assertEquals(
-            MessageManager.getString("label.add_reference_annotations"),
-            menu.getText());
     // now try null list
     menu.setEnabled(true);
-    testee.configureReferenceAnnotationsMenu(menu, seqs);
+    testee.configureReferenceAnnotationsMenu(menu, null);
     assertFalse(menu.isEnabled());
   }
 
@@ -80,7 +78,7 @@ public class PopupMenuTest
    * are no reference annotations to add to the alignment. The menu item should
    * be disabled.
    */
-  @Test
+  @Test(groups ={ "Functional" })
   public void testConfigureReferenceAnnotationsMenu_noReferenceAnnotations()
   {
     JMenuItem menu = new JMenuItem();
@@ -101,7 +99,7 @@ public class PopupMenuTest
    * reference annotations are already on the alignment. The menu item should be
    * disabled.
    */
-  @Test
+  @Test(groups ={ "Functional" })
   public void testConfigureReferenceAnnotationsMenu_alreadyAdded()
   {
     JMenuItem menu = new JMenuItem();
@@ -121,7 +119,7 @@ public class PopupMenuTest
    * The menu item should be enabled, and acquire a tooltip which lists the
    * annotation sources (calcIds) and type (labels).
    */
-  @Test
+  @Test(groups ={ "Functional" })
   public void testConfigureReferenceAnnotationsMenu()
   {
     JMenuItem menu = new JMenuItem();
@@ -132,7 +130,7 @@ public class PopupMenuTest
 
     testee.configureReferenceAnnotationsMenu(menu, seqs);
     assertTrue(menu.isEnabled());
-    String expected = "<html><table width=350 border=0><tr><td>Add annotations for<br/>JMOL/secondary structure<br/>PBD/Temp</td></tr></table></html>";
+    String expected = "<html><table width=350 border=0><tr><td align=justify>Add annotations for<br/>JMOL/secondary structure<br/>PBD/Temp</td></tr></table></html>";
     assertEquals(expected, menu.getToolTipText());
   }
 
@@ -142,7 +140,7 @@ public class PopupMenuTest
    * on the alignment. The menu item should be enabled, and acquire a tooltip
    * which lists the annotation sources (calcIds) and type (labels).
    */
-  @Test
+  @Test(groups ={ "Functional" })
   public void testConfigureReferenceAnnotationsMenu_notOnAlignment()
   {
     JMenuItem menu = new JMenuItem();
@@ -153,7 +151,7 @@ public class PopupMenuTest
 
     testee.configureReferenceAnnotationsMenu(menu, seqs);
     assertTrue(menu.isEnabled());
-    String expected = "<html><table width=350 border=0><tr><td>Add annotations for<br/>JMOL/secondary structure<br/>PBD/Temp</td></tr></table></html>";
+    String expected = "<html><table width=350 border=0><tr><td align=justify>Add annotations for<br/>JMOL/secondary structure<br/>PBD/Temp</td></tr></table></html>";
     assertEquals(expected, menu.getToolTipText());
   }
 
@@ -221,7 +219,7 @@ public class PopupMenuTest
    * The menu item should be enabled, and acquire a tooltip which lists the
    * annotation sources (calcIds) and type (labels).
    */
-  @Test
+  @Test(groups ={ "Functional" })
   public void testConfigureReferenceAnnotationsMenu_twoViews()
   {
   }
@@ -230,7 +228,7 @@ public class PopupMenuTest
    * Test for building menu options including 'show' and 'hide' annotation
    * types.
    */
-  @Test
+  @Test(groups ={ "Functional" })
   public void testBuildAnnotationTypesMenus()
   {
     JMenu showMenu = new JMenu();
@@ -241,28 +239,32 @@ public class PopupMenuTest
 
     // PDB.secondary structure on Sequence0
     AlignmentAnnotation annotation = new AlignmentAnnotation(
-            "secondary structure", "", 0);
+            "secondary structure", "", new Annotation[]
+                    {});
     annotation.setCalcId("PDB");
     annotation.visible = true;
     seqs.get(0).addAlignmentAnnotation(annotation);
     parentPanel.getAlignment().addAnnotation(annotation);
 
     // JMOL.secondary structure on Sequence0 - hidden
-    annotation = new AlignmentAnnotation("secondary structure", "", 0);
+    annotation = new AlignmentAnnotation("secondary structure", "", new Annotation[]
+            {});
     annotation.setCalcId("JMOL");
     annotation.visible = false;
     seqs.get(0).addAlignmentAnnotation(annotation);
     parentPanel.getAlignment().addAnnotation(annotation);
 
     // Jpred.SSP on Sequence0 - hidden
-    annotation = new AlignmentAnnotation("SSP", "", 0);
+    annotation = new AlignmentAnnotation("SSP", "", new Annotation[]
+            {});
     annotation.setCalcId("JPred");
     annotation.visible = false;
     seqs.get(0).addAlignmentAnnotation(annotation);
     parentPanel.getAlignment().addAnnotation(annotation);
 
     // PDB.Temp on Sequence1
-    annotation = new AlignmentAnnotation("Temp", "", 0);
+    annotation = new AlignmentAnnotation("Temp", "", new Annotation[]
+            {});
     annotation.setCalcId("PDB");
     annotation.visible = true;
     seqs.get(1).addAlignmentAnnotation(annotation);
@@ -308,7 +310,7 @@ public class PopupMenuTest
   /**
    * Test for building menu options with only 'hide' annotation types enabled.
    */
-  @Test
+  @Test(groups ={ "Functional" })
   public void testBuildAnnotationTypesMenus_showDisabled()
   {
     JMenu showMenu = new JMenu();
@@ -319,14 +321,16 @@ public class PopupMenuTest
 
     // PDB.secondary structure on Sequence0
     AlignmentAnnotation annotation = new AlignmentAnnotation(
-            "secondary structure", "", 0);
+            "secondary structure", "", new Annotation[]
+            {});
     annotation.setCalcId("PDB");
     annotation.visible = true;
     seqs.get(0).addAlignmentAnnotation(annotation);
     parentPanel.getAlignment().addAnnotation(annotation);
 
     // PDB.Temp on Sequence1
-    annotation = new AlignmentAnnotation("Temp", "", 0);
+    annotation = new AlignmentAnnotation("Temp", "", new Annotation[]
+    {});
     annotation.setCalcId("PDB");
     annotation.visible = true;
     seqs.get(1).addAlignmentAnnotation(annotation);
@@ -365,7 +369,7 @@ public class PopupMenuTest
   /**
    * Test for building menu options with only 'show' annotation types enabled.
    */
-  @Test
+  @Test(groups ={ "Functional" })
   public void testBuildAnnotationTypesMenus_hideDisabled()
   {
     JMenu showMenu = new JMenu();
@@ -376,14 +380,16 @@ public class PopupMenuTest
 
     // PDB.secondary structure on Sequence0
     AlignmentAnnotation annotation = new AlignmentAnnotation(
-            "secondary structure", "", 0);
+            "secondary structure", "", new Annotation[]
+            {});
     annotation.setCalcId("PDB");
     annotation.visible = false;
     seqs.get(0).addAlignmentAnnotation(annotation);
     parentPanel.getAlignment().addAnnotation(annotation);
 
     // PDB.Temp on Sequence1
-    annotation = new AlignmentAnnotation("Temp", "", 0);
+    annotation = new AlignmentAnnotation("Temp", "", new Annotation[]
+    {});
     annotation.setCalcId("PDB2");
     annotation.visible = false;
     seqs.get(1).addAlignmentAnnotation(annotation);