JAL-3438 spotless for 2.11.2.0

[jalview.git] / test / jalview / io / gff / Gff3HelperTest.java

diff --git a/test/jalview/io/gff/Gff3HelperTest.java b/test/jalview/io/gff/Gff3HelperTest.java
index cd5a0d8..5660666 100644 (file)
--- a/test/jalview/io/gff/Gff3HelperTest.java
+++ b/test/jalview/io/gff/Gff3HelperTest.java
@@ -94,11 +94,11 @@ public class Gff3HelperTest
     assertSame(newseqs.get(0), mapping.getAaSeqs()[0]);
     assertEquals(1, mapping.getdnaToProt().length);
     assertEquals(1, mapping.getdnaToProt()[0].getFromRanges().size());
-    assertArrayEquals(new int[] { 12923, 13060 }, mapping.getdnaToProt()[0]
-            .getFromRanges().get(0));
+    assertArrayEquals(new int[] { 12923, 13060 },
+            mapping.getdnaToProt()[0].getFromRanges().get(0));
     assertEquals(1, mapping.getdnaToProt()[0].getToRanges().size());
-    assertArrayEquals(new int[] { 1, 138 }, mapping.getdnaToProt()[0]
-            .getToRanges().get(0));
+    assertArrayEquals(new int[] { 1, 138 },
+            mapping.getdnaToProt()[0].getToRanges().get(0));
   }
 
   /**
@@ -141,11 +141,11 @@ public class Gff3HelperTest
     assertSame(newseqs.get(0), mapping.getAaSeqs()[0]);
     assertEquals(1, mapping.getdnaToProt().length);
     assertEquals(1, mapping.getdnaToProt()[0].getFromRanges().size());
-    assertArrayEquals(new int[] { 12923, 13060 }, mapping.getdnaToProt()[0]
-            .getFromRanges().get(0));
+    assertArrayEquals(new int[] { 12923, 13060 },
+            mapping.getdnaToProt()[0].getFromRanges().get(0));
     assertEquals(1, mapping.getdnaToProt()[0].getToRanges().size());
-    assertArrayEquals(new int[] { 138, 1 }, mapping.getdnaToProt()[0]
-            .getToRanges().get(0));
+    assertArrayEquals(new int[] { 138, 1 },
+            mapping.getdnaToProt()[0].getToRanges().get(0));
   }
 
   /**
@@ -223,14 +223,14 @@ public class Gff3HelperTest
     assertEquals(1, mapping.getdnaToProt().length);
     assertEquals(2, mapping.getdnaToProt()[0].getFromRanges().size());
     // the two spliced dna ranges are combined in one MapList
-    assertArrayEquals(new int[] { 12923, 13060 }, mapping.getdnaToProt()[0]
-            .getFromRanges().get(0));
-    assertArrayEquals(new int[] { 13411, 13550 }, mapping.getdnaToProt()[0]
-            .getFromRanges().get(1));
+    assertArrayEquals(new int[] { 12923, 13060 },
+            mapping.getdnaToProt()[0].getFromRanges().get(0));
+    assertArrayEquals(new int[] { 13411, 13550 },
+            mapping.getdnaToProt()[0].getFromRanges().get(1));
     assertEquals(1, mapping.getdnaToProt()[0].getToRanges().size());
     // the two cdna ranges are merged into one contiguous region
-    assertArrayEquals(new int[] { 1, 278 }, mapping.getdnaToProt()[0]
-            .getToRanges().get(0));
+    assertArrayEquals(new int[] { 1, 278 },
+            mapping.getdnaToProt()[0].getToRanges().get(0));
   }
 
   @Test(groups = "Functional")
@@ -252,7 +252,8 @@ public class Gff3HelperTest
 
     // Ensembl variant feature - extract "alleles" value
     // may be sequence_variant or a sub-type in the sequence ontology
-    sf = new SequenceFeature("feature_variant", "desc", 10, 20, 3f, "group");
+    sf = new SequenceFeature("feature_variant", "desc", 10, 20, 3f,
+            "group");
     List<String> atts = new ArrayList<String>();
     atts.add("A");
     atts.add("C");