assertEquals("match$17_5_30", newseqs.get(0).getName());
assertNotNull(newseqs.get(0).getSequenceFeatures());
- assertEquals(1, newseqs.get(0).getSequenceFeatures().length);
- SequenceFeature sf = newseqs.get(0).getSequenceFeatures()[0];
+ assertEquals(1, newseqs.get(0).getSequenceFeatures().size());
+ SequenceFeature sf = newseqs.get(0).getSequenceFeatures().get(0);
assertEquals(1, sf.getBegin());
assertEquals(26, sf.getEnd());
assertEquals("Pfam", sf.getType());
assertSame(newseqs.get(0), mapping.getAaSeqs()[0]);
assertEquals(1, mapping.getdnaToProt().length);
assertEquals(1, mapping.getdnaToProt()[0].getFromRanges().size());
- assertArrayEquals(new int[] { 5, 30 }, mapping.getdnaToProt()[0]
- .getFromRanges().get(0));
+ assertArrayEquals(new int[] { 5, 30 },
+ mapping.getdnaToProt()[0].getFromRanges().get(0));
assertEquals(1, mapping.getdnaToProt()[0].getToRanges().size());
- assertArrayEquals(new int[] { 1, 26 }, mapping.getdnaToProt()[0]
- .getToRanges().get(0));
+ assertArrayEquals(new int[] { 1, 26 },
+ mapping.getdnaToProt()[0].getToRanges().get(0));
}
}