}
seq = new Sequence("Seq", "");
- al = new Alignment(new SequenceI[]{ seq});
-
+ al = new Alignment(new SequenceI[] { seq });
+
/*
* AlignmentAnnotation constructor works out min-max range
*/
* expect white at or below threshold of 5
*/
Color expected = col <= 5 ? Color.white
- : new Color(50 + 10 * col,
- 200 - 10 * col,
- 150 + 10 * col);
+ : new Color(50 + 10 * col, 200 - 10 * col, 150 + 10 * col);
assertEquals(result, expected, "for column " + col);
}
-
+
/*
* now make 6-10 the span of the colour range
* (annotation value == column number in this test)
*/
int factor = col - THRESHOLD_FIVE;
Color expected = col <= 5 ? Color.white
- : new Color(50 + 20 * factor,
- 200 - 20 * factor,
- 150 + 20 * factor);
+ : new Color(50 + 20 * factor, 200 - 20 * factor,
+ 150 + 20 * factor);
Color result = testee.findColour('a', col, seq);
assertEquals(result, expected, "for column " + col);
}
AnnotationColourGradient testee = new AnnotationColourGradient(ann,
minColour, maxColour, AnnotationColourGradient.BELOW_THRESHOLD);
testee = (AnnotationColourGradient) testee.getInstance(null, al);
-
+
for (int col = 0; col < WIDTH; col++)
{
Color result = testee.findColour('a', col, seq);
Color expected = col >= 5 ? Color.white
- : new Color(50 + 10 * col,
- 200 - 10 * col, 150 + 10 * col);
+ : new Color(50 + 10 * col, 200 - 10 * col, 150 + 10 * col);
assertEquals(result, expected, "for column " + col);
}
-
+
/*
* now make 0-5 the span of the colour range
* (annotation value == column number in this test)
* range is 0-5 so steps of 100/5 = 20
*/
Color expected = col >= 5 ? Color.white
- : new Color(50 + 20 * col,
- 200 - 20 * col, 150 + 20 * col);
+ : new Color(50 + 20 * col, 200 - 20 * col, 150 + 20 * col);
Color result = testee.findColour('a', col, seq);
assertEquals(result, expected, "for column " + col);
}
{
int hue = col * 20;
Color c = col == 0 ? minColour : new Color(hue, hue, hue);
- assertEquals(testee.findColour('a', col, seq), c, "for column " + col);
+ assertEquals(testee.findColour('a', col, seq), c,
+ "for column " + col);
}
}
}