JAL-2738 use GeneLocus extends DBRefEntry to hold chromosomal mappings feature/JAL-2738GeneLocus
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Wed, 6 Feb 2019 15:27:49 +0000 (15:27 +0000)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Wed, 6 Feb 2019 15:27:49 +0000 (15:27 +0000)
commitdc3dd2e76d340b0577259c4e9d64372a1c126aee
tree19db1356de2f3d8120fe5ec2cd8b2a49f4acee1e
parent4149004183434db2a3b1c253fcba5e1563a188df
JAL-2738 use GeneLocus extends DBRefEntry to hold chromosomal mappings
16 files changed:
schemas/vamsas.xsd
src/jalview/analysis/AlignmentUtils.java
src/jalview/datamodel/DBRefEntry.java
src/jalview/datamodel/GeneLociI.java
src/jalview/datamodel/GeneLocus.java [new file with mode: 0644]
src/jalview/datamodel/Sequence.java
src/jalview/ext/ensembl/EnsemblGene.java
src/jalview/ext/ensembl/EnsemblLookup.java
src/jalview/ext/ensembl/EnsemblMap.java
src/jalview/gui/CrossRefAction.java
src/jalview/io/SequenceAnnotationReport.java
src/jalview/io/vcf/VCFLoader.java
src/jalview/project/Jalview2XML.java
src/jalview/xml/binding/jalview/Sequence.java
test/jalview/analysis/AlignmentUtilsTests.java
test/jalview/project/Jalview2xmlTests.java