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JAL-4034 allow a jalview_property to set the threshold level
author
Ben Soares
<b.soares@dundee.ac.uk>
Mon, 11 Jul 2022 15:25:17 +0000
(16:25 +0100)
committer
Ben Soares
<b.soares@dundee.ac.uk>
Mon, 11 Jul 2022 15:25:17 +0000
(16:25 +0100)
src/jalview/gui/StructureChooser.java
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diff --git
a/src/jalview/gui/StructureChooser.java
b/src/jalview/gui/StructureChooser.java
index
b32e435
..
3f5f39c
100644
(file)
--- a/
src/jalview/gui/StructureChooser.java
+++ b/
src/jalview/gui/StructureChooser.java
@@
-43,6
+43,7
@@
import javax.swing.table.AbstractTableModel;
import jalview.api.structures.JalviewStructureDisplayI;
import jalview.bin.Cache;
import jalview.api.structures.JalviewStructureDisplayI;
import jalview.bin.Cache;
+import jalview.bin.Console;
import jalview.bin.Jalview;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
import jalview.bin.Jalview;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
@@
-353,8
+354,10
@@
public class StructureChooser extends GStructureChooser
}
};
};
}
};
};
- if (ignoreGui || seqsWithoutSourceDBRef
- .size() < THRESHOLD_WARN_UNIPROT_FETCH_NEEDED)
+ int threshold = Cache.getDefault("THRESHOLD_WARN_UNIPROT_FETCH",
+ THRESHOLD_WARN_UNIPROT_FETCH_NEEDED);
+ Console.debug("Using Uniprot fetch threshold of " + threshold);
+ if (ignoreGui || seqsWithoutSourceDBRef.size() < threshold)
{
Executors.defaultThreadFactory().newThread(discoverCanonicalDBrefs)
.start();
{
Executors.defaultThreadFactory().newThread(discoverCanonicalDBrefs)
.start();