file for JAL-1268 jalview.io.Jalview2xmlTests.testTCoffeeScores

diff --git a/examples/uniref50.score_ascii b/examples/uniref50.score_ascii
new file mode 100644 (file)
index 0000000..4a506d9
--- /dev/null
+++ b/examples/uniref50.score_ascii
@@ -0,0 +1,99 @@
+T-COFFEE, Version_8.99(Fri Feb 18 08:27:45 CET 2011 - Revision 596)
+Cedric Notredame 
+CPU TIME:0 sec.
+SCORE=94
+*
+ BAD AVG GOOD
+*
+FER_CAPAA      :  99
+FER_CAPAN      :  94
+FER1_SOLLC     :  94
+Q93XJ9_SOLTU   :  93
+FER1_PEA       :  93
+Q7XA98_TRIPR   :  92
+FER1_MESCR     :  92
+FER1_SPIOL     :  92
+FER3_RAPSA     :  99
+FER1_ARATH     :  93
+FER_BRANA      :  99
+FER2_ARATH     :  93
+Q93Z60_ARATH   :  92
+FER1_MAIZE     :  91
+O80429_MAIZE   :  91
+cons           :  94
+
+FER_CAPAA      ------------------------------------------------
+FER_CAPAN      99------333445778888876665554-23333345--6778765-
+FER1_SOLLC     98------344556788888876665544-23333344--5677765-
+Q93XJ9_SOLTU   98------344556788888876555554-23333344--5677765-
+FER1_PEA       9964---1344556788888876655544-23333344--6778876-
+Q7XA98_TRIPR   9964---1344566788888876665554-222222210056777650
+FER1_MESCR     9954--1124455677878765--22222122233345--5677776-
+FER1_SPIOL     9965--111111--677777765444444233334445--6789876-
+FER3_RAPSA     ------------------------------------------------
+FER1_ARATH     9965----344556888888876665554233333344--6788776-
+FER_BRANA      ------------------------------------------------
+FER2_ARATH     9965----344556888888876665555233333345--6778876-
+Q93Z60_ARATH   9965----344556888888876665555233333345--6778876-
+FER1_MAIZE     99540001222334677777765555443--2222233--4567554-
+O80429_MAIZE   9854---------23445555---11111111111111--1212222-
+cons           996400012344557778887766544441222233340056777650
+
+
+FER_CAPAA      -----------9999999999999999999999999999999999999
+FER_CAPAN      4--445678999999999999999999999999999999999999999
+FER1_SOLLC     4--445678999999999999999999999999999999999999999
+Q93XJ9_SOLTU   4--445678999999999999999999999999999999999999999
+FER1_PEA       533444568999999999999999999999999999999999999999
+Q7XA98_TRIPR   333434568999999999999999999999999999999999999999
+FER1_MESCR     4333-5678999999999999999999999999999999999999999
+FER1_SPIOL     422--2334599999999999999999999999999999999999999
+FER3_RAPSA     -----------9999999999999999999999999999999999999
+FER1_ARATH     533446788999999999999999999999999999999999999999
+FER_BRANA      -----------9999999999999999999999999999999999999
+FER2_ARATH     533546788999999999999999999999999999999999999999
+Q93Z60_ARATH   533546788999999999999999999999999999999999999999
+FER1_MAIZE     4222--567899999999999999999999999999999999999999
+O80429_MAIZE   222435678999999999999999999999999999999999999999
+cons           422445677899999999999999999999999999999999999999
+
+
+FER_CAPAA      999999999999999999999999999999999999999999999999
+FER_CAPAN      999999999999999999999999999999999999999999999999
+FER1_SOLLC     999999999999999999999999999999999999999999999999
+Q93XJ9_SOLTU   999999999999999999999999999999999999999999999999
+FER1_PEA       999999999999999999999999999999999999999999999999
+Q7XA98_TRIPR   999999999999999999999999999999999999999999999999
+FER1_MESCR     999999999999999999999999999999999999999999999999
+FER1_SPIOL     999999999999999999999999999999999999999999999999
+FER3_RAPSA     999999999999999999999999999999999999999999999999
+FER1_ARATH     999999999999999999999999999999999999999999999999
+FER_BRANA      999999999999999999999999999999999999999999999999
+FER2_ARATH     999999999999999999999999999999999999999999999999
+Q93Z60_ARATH   99999999999999999999999999999-------------------
+FER1_MAIZE     999999999999999999999999999999999999999999999999
+O80429_MAIZE   999999999999999999999999999999999999999999999999
+cons           999999999999999999999999999999999999999999999999
+
+
+FER_CAPAA      999999998865-
+FER_CAPAN      999999998865-
+FER1_SOLLC     999999998865-
+Q93XJ9_SOLTU   999999998865-
+FER1_PEA       999999999865-
+Q7XA98_TRIPR   999999998865-
+FER1_MESCR     999999998865-
+FER1_SPIOL     999999998865-
+FER3_RAPSA     99999999874--
+FER1_ARATH     99999998874--
+FER_BRANA      99999999874--
+FER2_ARATH     99999998764--
+Q93Z60_ARATH   -------------
+FER1_MAIZE     9999999998620
+O80429_MAIZE   99999999874--
+cons           9999999987550
+
+
+
+
+