}
////
// Set JALVIEW_VERSION if it is not already set
- if (findProperty(JALVIEW_VERSION)==null || "".equals(JALVIEW_VERSION)) {
+ if (findProperty("JALVIEW_VERSION")==null || "".equals(JALVIEW_VERSION)) {
JALVIEW_VERSION = releaseProps.get("jalview.version")
}
//cloverTestClassesDir = cloverClassesDir
cloverDb = string("${cloverBuildDir}/clover.db")
- resourceClassesDir = useClover ? cloverClassesDir : classesDir
-
testSourceDir = useClover ? cloverTestInstrDir : testDir
testClassesDir = useClover ? cloverTestClassesDir : "${jalviewDir}/${test_output_dir}"
getdownAppBase = string("${getdown_channel_base}/${getdownDir}")
getdownLauncher = string("${jalviewDir}/${getdown_lib_dir}/${getdown_launcher}")
getdownAppDistDir = getdown_app_dir_alt
- buildProperties = string("${resourceDir}/${build_properties_file}")
reportRsyncCommand = false
jvlChannelName = CHANNEL.toLowerCase()
install4jSuffix = CHANNEL.substring(0, 1).toUpperCase() + CHANNEL.substring(1).toLowerCase(); // BUILD -> Build
// DEVELOP-RELEASE is usually associated with a Jalview release series so set the version
JALVIEW_VERSION=JALVIEW_VERSION+"-develop"
+ channelPropertiesFile = string("${channel_properties_dir}/develop_properties")
+ getdownImagesDir = "${getdown_images_dir}/develop"
+ getdownBgColour = "000000"
+ getdownFgColour = "FFFFFF"
+ getdownLightFgColour = "CCCCFF"
install4jSuffix = "Develop"
install4jDSStore = "DS_Store-DEVELOP"
install4jDMGBackgroundImage = "jalview_dmg_background-DEVELOP.png"
install4jExtraScheme = "jalviewd"
install4jInstallerName = "${jalview_name} Develop Installer"
+ install4jMacIconsFile = string("${install4j_utils_dir}/develop/${install4j_mac_icons_file}")
+ install4jWindowsIconsFile = string("${install4j_utils_dir}/develop/${install4j_windows_icons_file}")
+ install4jPngIconFile = string("${install4j_utils_dir}/develop/${install4j_png_icon_file}")
break
case "TEST-RELEASE":
install4jHomeDir = System.getProperty("user.home") + install4jHomeDir.substring(1)
}
+ resourceBuildDir = string("${buildDir}/resources")
+ resourcesBuildDir = string("${resourceBuildDir}/resources_build")
+ helpBuildDir = string("${resourceBuildDir}/help_build")
+ docBuildDir = string("${resourceBuildDir}/doc_build")
-
+ buildProperties = string("${resourcesBuildDir}/${build_properties_file}")
buildingHTML = string("${jalviewDir}/${doc_dir}/building.html")
- helpFile = string("${resourceClassesDir}/${help_dir}/help.jhm")
helpParentDir = string("${jalviewDir}/${help_parent_dir}")
helpSourceDir = string("${helpParentDir}/${help_dir}")
+ helpFile = string("${helpBuildDir}/${help_dir}/help.jhm")
relativeBuildDir = file(jalviewDirAbsolutePath).toPath().relativize(buildDir.toPath())
}
resources {
- srcDirs resourceDir
- srcDirs += helpParentDir
+ srcDirs = [ resourcesBuildDir, docBuildDir, helpBuildDir ]
}
- jar.destinationDir = file("${jalviewDir}/${package_dir}")
-
compileClasspath = files(sourceSets.main.java.outputDir)
compileClasspath += fileTree(dir: "${jalviewDir}/${libDir}", include: ["*.jar"])
runtimeClasspath = compileClasspath
+ runtimeClasspath += files(sourceSets.main.resources.srcDirs)
}
clover {
compileClasspath += fileTree(dir: "${jalviewDir}/${utils_dir}/testnglibs", include: ["**/*.jar"])
runtimeClasspath = compileClasspath
+ runtimeClasspath += files(sourceSets.test.resources.srcDirs)
}
}
classpath {
//defaultOutputDir = sourceSets.main.java.outputDir
- def removeThese = []
- configurations.each{
- if (it.isCanBeResolved()) {
- removeThese += it
+ configurations.each{ c->
+ if (c.isCanBeResolved()) {
+ minusConfigurations += [c]
}
}
- minusConfigurations += removeThese
plusConfigurations = [ ]
file {
}
-task createBuildProperties(type: WriteProperties) {
- group = "build"
- description = "Create the ${buildProperties} file"
-
- inputs.dir(sourceDir)
- inputs.dir(resourceDir)
- file(buildProperties).getParentFile().mkdirs()
- outputFile (buildProperties)
- // taking time specific comment out to allow better incremental builds
- comment "--Jalview Build Details--\n"+getDate("yyyy-MM-dd HH:mm:ss")
- //comment "--Jalview Build Details--\n"+getDate("yyyy-MM-dd")
- property "BUILD_DATE", getDate("HH:mm:ss dd MMMM yyyy")
- property "VERSION", JALVIEW_VERSION
- property "INSTALLATION", INSTALLATION+" git-commit:"+gitHash+" ["+gitBranch+"]"
- outputs.file(outputFile)
-}
-
-
-clean {
- doFirst {
- delete buildProperties
- }
-}
-
-
-task cleanBuildingHTML(type: Delete) {
- doFirst {
- delete buildingHTML
- }
-}
-
-
def convertMdToHtml (FileTree mdFiles, File cssFile) {
MutableDataSet options = new MutableDataSet()
}
+task copyDocs(type: Copy) {
+ def inputDir = "${jalviewDir}/${doc_dir}"
+ def outputDir = "${docBuildDir}/${doc_dir}"
+ from(inputDir) {
+ include('**/*.txt')
+ include('**/*.md')
+ include('**/*.html')
+ include('**/*.xml')
+ filter(ReplaceTokens,
+ beginToken: '$$',
+ endToken: '$$',
+ tokens: [
+ 'Version-Rel': JALVIEW_VERSION,
+ 'Year-Rel': getDate("yyyy")
+ ]
+ )
+ }
+ from(inputDir) {
+ exclude('**/*.txt')
+ exclude('**/*.md')
+ exclude('**/*.html')
+ exclude('**/*.xml')
+ }
+ into outputDir
+
+ inputs.dir(inputDir)
+ outputs.dir(outputDir)
+}
+
+
task convertMdFiles {
- dependsOn cleanBuildingHTML
- def mdFiles = fileTree(dir: "${jalviewDir}/${doc_dir}", include: "*.md")
+ dependsOn copyDocs
+ def mdFiles = fileTree(dir: docBuildDir, include: "*.md")
def cssFile = file("${jalviewDir}/${flexmark_css}")
doLast {
}
-task syncDocs(type: Sync) {
- dependsOn convertMdFiles
- def syncDir = "${classesDir}/${doc_dir}"
- from fileTree("${jalviewDir}/${doc_dir}")
- into syncDir
-}
-
-
task copyHelp(type: Copy) {
def inputDir = helpSourceDir
- def outputDir = "${resourceClassesDir}/${help_dir}"
+ def outputDir = "${helpBuildDir}/${help_dir}"
from(inputDir) {
- exclude '**/*.gif'
- exclude '**/*.jpg'
- exclude '**/*.png'
+ include('**/*.txt')
+ include('**/*.md')
+ include('**/*.html')
+ include('**/*.hs')
+ include('**/*.xml')
+ include('**/*.jhm')
filter(ReplaceTokens,
beginToken: '$$',
endToken: '$$',
)
}
from(inputDir) {
- include '**/*.gif'
- include '**/*.jpg'
- include '**/*.png'
+ exclude('**/*.txt')
+ exclude('**/*.md')
+ exclude('**/*.html')
+ exclude('**/*.hs')
+ exclude('**/*.xml')
+ exclude('**/*.jhm')
}
into outputDir
}
-task syncLib(type: Sync) {
- def syncDir = "${resourceClassesDir}/${libDistDir}"
- from fileTree("${jalviewDir}/${libDistDir}")
- into syncDir
+task copyResources(type: Copy) {
+ def inputDir = resourceDir
+ def outputDir = resourcesBuildDir
+ from(inputDir) {
+ include('**/*.txt')
+ include('**/*.md')
+ include('**/*.html')
+ include('**/*.xml')
+ filter(ReplaceTokens,
+ beginToken: '$$',
+ endToken: '$$',
+ tokens: [
+ 'Version-Rel': JALVIEW_VERSION,
+ 'Year-Rel': getDate("yyyy")
+ ]
+ )
+ }
+ from(inputDir) {
+ exclude('**/*.txt')
+ exclude('**/*.md')
+ exclude('**/*.html')
+ exclude('**/*.xml')
+ }
+ into outputDir
+
+ inputs.dir(inputDir)
+ outputs.dir(outputDir)
}
-task syncResources(type: Sync) {
- dependsOn createBuildProperties
- from resourceDir
- include "**/*.*"
- into "${resourceClassesDir}"
- preserve {
- include "**"
- }
+task createBuildProperties(type: WriteProperties) {
+ dependsOn copyResources
+ group = "build"
+ description = "Create the ${buildProperties} file"
+
+ inputs.dir(sourceDir)
+ inputs.dir(resourcesBuildDir)
+ outputFile (buildProperties)
+ // taking time specific comment out to allow better incremental builds
+ comment "--Jalview Build Details--\n"+getDate("yyyy-MM-dd HH:mm:ss")
+ //comment "--Jalview Build Details--\n"+getDate("yyyy-MM-dd")
+ property "BUILD_DATE", getDate("HH:mm:ss dd MMMM yyyy")
+ property "VERSION", JALVIEW_VERSION
+ property "INSTALLATION", INSTALLATION+" git-commit:"+gitHash+" ["+gitBranch+"]"
+ outputs.file(outputFile)
}
task prepare {
- dependsOn syncResources
- dependsOn syncDocs
+ dependsOn copyResources
+ dependsOn copyDocs
dependsOn copyHelp
+ dependsOn createBuildProperties
+ dependsOn convertMdFiles
}
+compileJava.dependsOn prepare
+run.dependsOn compileJava
+//run.dependsOn prepare
+
+
//testReportDirName = "test-reports" // note that test workingDir will be $jalviewDir
test {
dependsOn prepare
- //dependsOn compileJava ////? DELETE
if (useClover) {
dependsOn cloverClasses
} else { //?
- dependsOn compileJava //?
+ dependsOn compileJava //?
}
useTestNG() {
maxHeapSize = "1024m"
workingDir = jalviewDir
- //systemProperties 'clover.jar' System.properties.clover.jar
def testLaf = project.findProperty("test_laf")
if (testLaf != null) {
println("Setting Test LaF to '${testLaf}'")
dependsOn copyHelp
classpath = sourceSets.main.compileClasspath
main = "com.sun.java.help.search.Indexer"
- workingDir = "${classesDir}/${help_dir}"
+ workingDir = "${helpBuildDir}/${help_dir}"
def argDir = "html"
args = [ argDir ]
inputs.dir("${workingDir}/${argDir}")
classpath = files("${jalviewDir}/${utils_dir}")
main = "HelpLinksChecker"
workingDir = jalviewDir
- args = [ "${classesDir}/${help_dir}", "-nointernet" ]
+ args = [ "${helpBuildDir}/${help_dir}", "-nointernet" ]
def outFOS = new FileOutputStream(helpLinksCheckerOutFile, false) // false == don't append
def errFOS = outFOS
outFOS,
errorOutput)
- inputs.dir("${classesDir}/${help_dir}")
+ inputs.dir(helpBuildDir)
outputs.file(helpLinksCheckerOutFile)
}
+
// import the pubhtmlhelp target
ant.properties.basedir = "${jalviewDir}"
-ant.properties.helpBuildDir = "${jalviewDirAbsolutePath}/${classes_dir}/${help_dir}"
+ant.properties.helpBuildDir = "${helpBuildDir}/${help_dir}"
ant.importBuild "${utils_dir}/publishHelp.xml"
dependsOn linkCheck
dependsOn buildIndices
dependsOn createBuildProperties
+ dependsOn prepare
manifest {
attributes "Main-Class": main_class,
"Permissions": "all-permissions",
- "Application-Name": "Jalview Desktop",
- "Codebase": application_codebase
+ "Application-Name": install4jApplicationName,
+ "Codebase": application_codebase,
+ "Implementation-Version": JALVIEW_VERSION
}
- destinationDir = file("${jalviewDir}/${package_dir}")
- archiveName = rootProject.name+".jar"
+ destinationDirectory = file("${jalviewDir}/${package_dir}")
+ archiveFileName = rootProject.name+".jar"
exclude "cache*/**"
exclude "*.jar"
exclude "**/*.jar"
exclude "**/*.jar.*"
- inputs.dir(classesDir)
- outputs.file("${jalviewDir}/${package_dir}/${archiveName}")
+ inputs.dir(sourceSets.main.java.outputDir)
+ sourceSets.main.resources.srcDirs.each{ dir ->
+ inputs.dir(dir)
+ }
+ outputs.file("${destinationDirectory}/${archiveFileName}")
}
// doing a Sync instead of Copy as Copy doesn't deal with "outputs" very well
task syncJars(type: Sync) {
+ dependsOn jar
from fileTree(dir: "${jalviewDir}/${libDistDir}", include: "**/*.jar").files
into "${jalviewDir}/${package_dir}"
preserve {
- include jar.archiveName
+ include jar.archiveFileName.getOrNull()
}
}
dependsOn clean
}
+
shadowJar {
group = "distribution"
description = "Create a single jar file with all dependency libraries merged. Can be run with java -jar"
include("*.jar")
}
manifest {
- attributes 'Implementation-Version': JALVIEW_VERSION
+ attributes "Implementation-Version": JALVIEW_VERSION,
+ "Application-Name": install4jApplicationName
}
mainClassName = shadow_jar_main_class
mergeServiceFiles()
def VERSION_UNDERSCORES = JALVIEW_VERSION.replaceAll("\\.", "_")
def outputFileName = "${project.name}_${VERSION_UNDERSCORES}.tar.gz"
- // cater for buildship < 3.1 [3.0.1 is max version in eclipse 2018-09]
- try {
- archiveFileName = outputFileName
- } catch (Exception e) {
- archiveName = outputFileName
- }
+ archiveFileName = outputFileName
compression Compression.GZIP
dependsOn copyHelp
dependsOn pubhtmlhelp
- inputs.dir("${classesDir}/${help_dir}")
+ inputs.dir("${helpBuildDir}/${help_dir}")
outputs.dir("${buildDir}/distributions/${help_dir}")
}
description "Creates a tar.gz file for the website"
dependsOn jalviewjsBuildSite
def outputFilename = "jalviewjs-site-${JALVIEW_VERSION}.tar.gz"
- try {
- archiveFileName = outputFilename
- } catch (Exception e) {
- archiveName = outputFilename
- }
+ archiveFileName = outputFilename
compression Compression.GZIP
git://source.jalview.org / jalview.git / commitdiff