+++ /dev/null
-<html>
-<!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
- -->
-<head>
-<title>Jalview local Jnlp File</title>
-</head>
-<body>
-<h1>Jalview local Jnlp File</h1>
-<pre>
-<jnlp spec="1.0+" codebase="http://www.jalview.org/webstart/">
- <information>
- <title>Jalview</title>
- <vendor>The Barton Group</vendor>
- <homepage href="http://www.jalview.org"/>
- <description>Jalview Multiple Alignment Editor</description>
- <description kind="short">Jalview</description>
- <icon href="http://www.jalview.org/webstart/logo_big.gif" kind="default"/>
- <association extensions="fa" mime-type="application-x/ext-file"/>
- <association extensions="fasta" mime-type="application-x/ext-file"/>
- <association extensions="fastq" mime-type="application-x/ext-file"/>
- <association extensions="blc" mime-type="application-x/ext-file"/>
- <association extensions="msf" mime-type="application-x/ext-file"/>
- <association extensions="pfam" mime-type="application-x/ext-file"/>
- <association extensions="aln" mime-type="application-x/ext-file"/>
- <association extensions="pir" mime-type="application-x/ext-file"/>
- <association extensions="stk" mime-type="application-x/ext-file"/>
- <offline-allowed/>
- </information>
- <security>
- <all-permissions/>
- </security>
- <resources>
- <!-- <em>the additional memory parameters are here</em> -->
- <j2se version="1.5+" initial-heap-size="500M" max-heap-size="1000M"/>
- <jar href="jalview.jar"/>
- <jar href="JGoogleAnalytics-0.2.1-SNAPSHOT.jar"/>
- <jar href="Jmol-12.1.13.jar"/>
- <jar href="activation.jar"/>
- <jar href="axis.jar"/>
- <jar href="castor-1.1-cycle-xml.jar"/>
- <jar href="commons-discovery.jar"/>
- <jar href="commons-logging.jar"/>
- <jar href="jaxrpc.jar"/>
- <jar href="jhall.jar"/>
- <jar href="log4j-1.2.8.jar"/>
- <jar href="mail.jar"/>
- <jar href="min-jaba-client.jar"/>
- <jar href="regex.jar"/>
- <jar href="saaj.jar"/>
- <jar href="vamsas-client.jar"/>
- <jar href="wsdl4j.jar"/>
- <jar href="xercesImpl.jar"/>
- <jar href="xml-apis.jar"/>
- <property name="jalview.version" value="2.6.1"/>
- </resources>
- <application-desc main-class="jalview.bin.Jalview"/>
-</jnlp>
-</pre>
-<address><a
- href="http://www.jalview.org/mailman/listinfo/jalview-discuss">If
-you have problems, send an email to jalview-discuss</a></address>
-</body>
-</html>
The way you increase the memory settings for the JVM depends on which installation
of Jalview you use:</p>
<ul>
- <li><em><font size="3">Web Start Version</font></em>
- <p>JavaWS sets the JVM parameters through special tags in the JNLP file. You'll
- need to <a href="jalviewjnlp.html">make your own jnlp file</a> and add the following parameter into the
- <resources> element.
- <pre>
-<j2se version="1.5+" initial-heap-size="500M" max-heap-size="1000M"/>
-</pre>
- Save the jnlp file somewhere and then - if you start Jalview through your
- web browser, point your browser at the file's url, othewise simply run javaws
- with the file location as its argument. The file's url is something like :<br>
- <pre>
+ <li><em><font size="3">Web Start Version</font></em>
+ <p>
+ JavaWS sets the JVM parameters through special tags in the JNLP
+ file. You can obtain a JNLP file with modified memory settings from
+ our service with the following link (replace 2G with desired memory
+ in G or M):<br /> <a
+ href="http://www.jalview.org/services/launchApp?jvm-max-heap=2G">http://www.jalview.org/services/launchApp?jvm-max-heap=2G</a>
+ </p>
+ <p>
+ Alternatively, if you want to create your own JNLP file then please
+ download the latest JNLP file from <a
+ href="http://www.jalview.org/webstart/jalview.jnlp">http://www.jalview.org/webstart/jalview.jnlp</a>
+ and modify the max-heap-size parameter for the j2se tag in the
+ <resources> element. e.g.
+ <pre>
+<j2se version="1.7+" initial-heap-size="500M" max-heap-size="1000M"/>
+</pre> In both cases, you should save your new jnlp file somewhere and
+ then either point your web browser at the file's url, launch it from
+ your file browser, or from a terminal window run javaws (located in
+ your Java installation's bin directory) with the file location as its
+ argument. The file's url is something like :<br> <pre>
file://<full path to file>
-</pre>
- If jalview doesn't start up, see <a href="#memsetting">below</a>. You'll have
- to edit the above settings in the JNLP file using a text editor, save it,
- and try starting Jalview with it once more.
- <p></li>
- <li><em><font size="3">Install Anywhere version</font></em>
+</pre> If jalview doesn't start up, see <a href="#memsetting">below</a>.
+ You'll have to edit the above settings in the JNLP file using a text
+ editor, save it, and try starting Jalview with it once more.
+ </p></li>
+ <li><em><font size="3">Install Anywhere version</font></em>
<p> You need to change the InstallAnywhere configuration settings for the
application. These are found in different places depending upon which operating
system you have :
git://source.jalview.org / jalview.git / commitdiff