JAL-4262 Make an excepetion for STDOUT filename in old style arguments detection

diff --git a/src/jalview/bin/argparser/ArgParser.java b/src/jalview/bin/argparser/ArgParser.java
index b300c67..7581dde 100644 (file)
--- a/src/jalview/bin/argparser/ArgParser.java
+++ b/src/jalview/bin/argparser/ArgParser.java
@@ -250,7 +250,8 @@ public class ArgParser
           mixedExamples[1] = arg;
         }
       }
-      else if (arg.startsWith("-") || arg.equals("open"))
+      else if ((arg.startsWith("-") && !arg.equals(STDOUTFILENAME))
+              || arg.equals("open"))
       {
         d = true;
         if (mixedExamples[0] == null)