comments only

diff --git a/src/jalview/project/Jalview2XML.java b/src/jalview/project/Jalview2XML.java
index 2c93ee5..133ab57 100644 (file)
--- a/src/jalview/project/Jalview2XML.java
+++ b/src/jalview/project/Jalview2XML.java
@@ -4453,7 +4453,7 @@ public class Jalview2XML
             int height = safeInt(structureState.getHeight());
 
             // Probably don't need to do this anymore...
-            // Desktop.getDesktop().getComponentAt(x, y);
+            // Desktop.getDesktopPane().getComponentAt(x, y);
             // TODO: NOW: check that this recovers the PDB file correctly.
             String pdbFile = loadPDBFile(jprovider, pdbid.getId(),
                     pdbid.getFile());

diff --git a/src/jalview/ws/jws2/SequenceAnnotationWSClient.java b/src/jalview/ws/jws2/SequenceAnnotationWSClient.java
index 9358c76..e8116a1 100644 (file)
--- a/src/jalview/ws/jws2/SequenceAnnotationWSClient.java
+++ b/src/jalview/ws/jws2/SequenceAnnotationWSClient.java
@@ -67,7 +67,7 @@ public class SequenceAnnotationWSClient extends Jws2Client
     // dan changed! dan test. comment out if conditional
     // if (alignFrame.getViewport().getAlignment().isNucleotide())
     // {
-    // JvOptionPane.showMessageDialog(Desktop.getDesktop(), sh.serviceType
+    // JvOptionPane.showMessageDialog(Desktop.getDesktopPane(), sh.serviceType
     // + " can only be used\nfor amino acid alignments.",
     // "Wrong type of sequences!", JvOptionPane.WARNING_MESSAGE);
     // return;