JAL-3111 more whatsNew tweaks

diff --git a/help/help/html/whatsNew.html b/help/help/html/whatsNew.html
index c5f4f75..8150b80 100755 (executable)
--- a/help/help/html/whatsNew.html
+++ b/help/help/html/whatsNew.html
@@ -31,7 +31,7 @@
     we've addressed many bugs, and also made some important changes in
     the way the Jalview desktop is installed and launched.</p>
   <ul>
     we've addressed many bugs, and also made some important changes in
     the way the Jalview desktop is installed and launched.</p>
   <ul>

-    <li><em>The Jalview Launcher and Update System</em><br />
+    <li><strong>The Jalview Launcher and Update System</strong>.

       Jalview's new installation model means you'll only need to
       download and install Jalview once. After installation, Jalview
       will automatically keep itself up to date. The launcher also sets
       Jalview's new installation model means you'll only need to
       download and install Jalview once. After installation, Jalview
       will automatically keep itself up to date. The launcher also sets

@@ -44,26 +44,25 @@
       href="https://en.wikipedia.org/wiki/Three_Rings_Design">Three
         Rings Design</a> for Jalview's new over the air update system: <a
       href="https://github.com/threerings/getdown">Getdown</a>.</li>
       href="https://en.wikipedia.org/wiki/Three_Rings_Design">Three
         Rings Design</a> for Jalview's new over the air update system: <a
       href="https://github.com/threerings/getdown">Getdown</a>.</li>

-    <li><em>VCF Support</em>. Proteins and genomic contigs with
+    <li><strong>VCF Support</strong>. Proteins and genomic contigs with

       chromosomal location annotation (such as protein coding genes
       retrieved from Ensembl) can be annotated with variants <a
       href="features/importvcf.html">imported from a local VCF file</a>.</li>
       chromosomal location annotation (such as protein coding genes
       retrieved from Ensembl) can be annotated with variants <a
       href="features/importvcf.html">imported from a local VCF file</a>.</li>

-    <li><em>Feature filters and attribute colourschemes</em>. A new
+    <li><strong>Feature filters and attribute colourschemes</strong>. A new

       <a href="features/featureschemes.html">Feature Display
         Settings</a> dialog allows filters and feature attribute based
       colourschemes to be constructed, and a new <em>filters</em> column
       added to the <a href="features/featuresettings.html">Feature
         Settings</a> dialog. Jalview's sequence feature datamodel has also
       been further optimised, and is now maintained as a separate
       <a href="features/featureschemes.html">Feature Display
         Settings</a> dialog allows filters and feature attribute based
       colourschemes to be constructed, and a new <em>filters</em> column
       added to the <a href="features/featuresettings.html">Feature
         Settings</a> dialog. Jalview's sequence feature datamodel has also
       been further optimised, and is now maintained as a separate

-      library <em><a
-        href="https://github.com/bartongroup/IntervalStoreJ">IntervalStoreJ</a></em></li>
-    <li><em>Alternative tables for CDS translation</em>. The <a
-      href="menus/alwcalculate.html">Translate as CDNA</a> option now
+      library <em>IntervalStoreJ</em> (available at https://github.com/bartongroup/IntervalStoreJ)</li>
+    <li><strong>Alternative tables for CDS translation</strong>. The <a
+      href="menus/alwcalculate.html">Translate as cDNA</a> option now

       offers alternative amino acid coding schemes.</li>
       offers alternative amino acid coding schemes.</li>

-    <li><em>PCA plots stored in Jalview Projects</em><br />The <a
+    <li><strong>PCA plots stored in Jalview Projects</strong>. The <a

       href="calculations/pca.html">PCA viewer</a> user interface has
       also been improved.</li>
       href="calculations/pca.html">PCA viewer</a> user interface has
       also been improved.</li>

-    <li><em>Backup files</em><br />Jalview will automatically
+    <li><strong>Backup files</strong>. Jalview will automatically

       create backups when overwriting existing files, and - unlike with
       earlier versions, should Jalview crash during a save, the original
       file will be unaffected. The <a
       create backups when overwriting existing files, and - unlike with
       earlier versions, should Jalview crash during a save, the original
       file will be unaffected. The <a

@@ -98,8 +97,8 @@
     Jalview. Whilst Jalview 2.11 has been in development, we have also
     been working with Prof. Bob Hanson (Jmol and JSmol) to enable
     Jalview to run as both a Java application and a JavaScript app in a
     Jalview. Whilst Jalview 2.11 has been in development, we have also
     been working with Prof. Bob Hanson (Jmol and JSmol) to enable
     Jalview to run as both a Java application and a JavaScript app in a

-    web page. To find out more, see the <a
-      href="http://www.jalview.org/jalview-js/">JalviewJS web page</a>.
+    web page. To find out more, open <em>http://www.jalview.org/jalview-js/</em>
+    in Chrome or Firefox.

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