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JAL-2602 same fix for applet
author
gmungoc
<g.m.carstairs@dundee.ac.uk>
Fri, 30 Jun 2017 10:44:27 +0000
(11:44 +0100)
committer
gmungoc
<g.m.carstairs@dundee.ac.uk>
Fri, 30 Jun 2017 10:44:27 +0000
(11:44 +0100)
src/jalview/appletgui/AlignViewport.java
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diff --git
a/src/jalview/appletgui/AlignViewport.java
b/src/jalview/appletgui/AlignViewport.java
index
73cd9e9
..
a894d0b
100644
(file)
--- a/
src/jalview/appletgui/AlignViewport.java
+++ b/
src/jalview/appletgui/AlignViewport.java
@@
-26,6
+26,7
@@
import jalview.api.FeatureSettingsModelI;
import jalview.bin.JalviewLite;
import jalview.commands.CommandI;
import jalview.datamodel.AlignmentI;
import jalview.bin.JalviewLite;
import jalview.commands.CommandI;
import jalview.datamodel.AlignmentI;
+import jalview.datamodel.Annotation;
import jalview.datamodel.ColumnSelection;
import jalview.datamodel.HiddenColumns;
import jalview.datamodel.SearchResults;
import jalview.datamodel.ColumnSelection;
import jalview.datamodel.HiddenColumns;
import jalview.datamodel.SearchResults;
@@
-248,15
+249,18
@@
public class AlignViewport extends AlignmentViewport implements
StringBuilder seqs = new StringBuilder(consensus.annotations.length);
for (int i = 0; i < consensus.annotations.length; i++)
{
StringBuilder seqs = new StringBuilder(consensus.annotations.length);
for (int i = 0; i < consensus.annotations.length; i++)
{
- if (consensus.annotations[i] != null)
+ Annotation annotation = consensus.annotations[i];
+ if (annotation != null)
{
{
- if (consensus.annotations[i].description.charAt(0) == '[')
+ String description = annotation.description;
+ if (description != null && description.startsWith("["))
{
{
- seqs.append(consensus.annotations[i].description.charAt(1));
+ // consensus is a tie - just pick the first one
+ seqs.append(annotation.description.charAt(1));
}
else
{
}
else
{
- seqs.append(consensus.annotations[i].displayCharacter);
+ seqs.append(annotation.displayCharacter);
}
}
}
}
}
}