public static final int NEW_WINDOW_HEIGHT = 500;\r
jalview.bin.JalviewLite applet;\r
\r
+ public AlignFrame(AlignmentI al)\r
+ {\r
+ this.applet = null;\r
+ viewport = new AlignViewport(al, null);\r
+ alignPanel = new AlignmentPanel(this, viewport);\r
+ add(alignPanel);\r
+ alignPanel.validate();\r
+\r
+ this.addWindowListener(new WindowAdapter()\r
+ {\r
+ public void windowClosing(WindowEvent e)\r
+ {\r
+ closeMenuItem_actionPerformed(null);\r
+ }\r
+ });\r
+\r
+ }\r
+\r
+\r
public AlignFrame(AlignmentI al, jalview.bin.JalviewLite applet)\r
{\r
this.applet = applet;\r
alignPanel.validate();\r
\r
String treeFile = applet.getParameter("treeFile");\r
- TreePanel treepanel = null;\r
if (treeFile != null)\r
{\r
try\r