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JAL-3691 Changed .toUppoerCase().startsWith(...) to .regionMatches(true,...) as upper...
author
Ben Soares
<b.soares@dundee.ac.uk>
Wed, 5 Aug 2020 21:57:13 +0000
(22:57 +0100)
committer
Ben Soares
<b.soares@dundee.ac.uk>
Wed, 5 Aug 2020 21:57:13 +0000
(22:57 +0100)
src/jalview/io/ScoreMatrixFile.java
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diff --git
a/src/jalview/io/ScoreMatrixFile.java
b/src/jalview/io/ScoreMatrixFile.java
index
0b70dce
..
ee7503d
100644
(file)
--- a/
src/jalview/io/ScoreMatrixFile.java
+++ b/
src/jalview/io/ScoreMatrixFile.java
@@
-20,13
+20,13
@@
*/
package jalview.io;
*/
package jalview.io;
+import java.io.IOException;
+import java.util.StringTokenizer;
+
import jalview.analysis.scoremodels.ScoreMatrix;
import jalview.analysis.scoremodels.ScoreModels;
import jalview.datamodel.SequenceI;
import jalview.analysis.scoremodels.ScoreMatrix;
import jalview.analysis.scoremodels.ScoreModels;
import jalview.datamodel.SequenceI;
-import java.io.IOException;
-import java.util.StringTokenizer;
-
/**
* A class that can parse a file containing a substitution matrix and register
* it for use in Jalview
/**
* A class that can parse a file containing a substitution matrix and register
* it for use in Jalview
@@
-131,7
+131,8
@@
public class ScoreMatrixFile extends AlignFile
{
continue;
}
{
continue;
}
- if (data.toUpperCase().startsWith(SCOREMATRIX))
+ // equivalent to data.startsWithIgnoreCase(SCOREMATRIX)
+ if (data.regionMatches(true, 0, SCOREMATRIX, 0, SCOREMATRIX.length()))
{
/*
* Parse name from ScoreMatrix <name>
{
/*
* Parse name from ScoreMatrix <name>