JAL-3192 corefile after loading in exampleFile_2_7.jvp
authorJim Procter <jprocter@issues.jalview.org>
Tue, 19 Mar 2019 15:37:04 +0000 (15:37 +0000)
committerJim Procter <jprocter@issues.jalview.org>
Tue, 19 Mar 2019 15:37:04 +0000 (15:37 +0000)
classlists/jvexamplefile.txt [new file with mode: 0644]

diff --git a/classlists/jvexamplefile.txt b/classlists/jvexamplefile.txt
new file mode 100644 (file)
index 0000000..e706bb0
--- /dev/null
@@ -0,0 +1,368 @@
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