Added annotation export configuration for Html export option

diff --git a/.classpath b/.classpath
index 4c39421..b75a654 100644 (file)
--- a/.classpath
+++ b/.classpath
@@ -55,5 +55,6 @@
        <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
        <classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/Plugin.jar"/>
        <classpathentry kind="lib" path="lib/jfreesvg-2.1.jar"/>
+       <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.launching.macosx.MacOSXType/Java SE 6 [1.6.0_65-b14-462]"/>
        <classpathentry kind="output" path="classes"/>
 </classpath>

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index 17c2472..50e3559 100755 (executable)
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -398,6 +398,10 @@ public class Jalview
         {
           af.getViewport().setSortByTree(true);
         }
+        if (aparser.contains("no-annotation"))
+        {
+          af.getViewport().setShowAnnotation(false);
+        }
         if (aparser.contains("nosortbytree"))
         {
           af.getViewport().setSortByTree(false);