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JAL-2282 Updated docs with information about when warning is shown
bug/JAL-2282
author
kiramt
<k.mourao@dundee.ac.uk>
Wed, 16 Nov 2016 15:54:05 +0000
(15:54 +0000)
committer
kiramt
<k.mourao@dundee.ac.uk>
Wed, 16 Nov 2016 15:54:05 +0000
(15:54 +0000)
help/html/webServices/urllinks.html
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a/help/html/webServices/urllinks.html
b/help/html/webServices/urllinks.html
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--- a/
help/html/webServices/urllinks.html
+++ b/
help/html/webServices/urllinks.html
@@
-66,6
+66,12
@@
the sequence ID for the sequence (<em>since Jalview 2.10.1</em>).
</p>
<p>
the sequence ID for the sequence (<em>since Jalview 2.10.1</em>).
</p>
<p>
+ If Jalview opens a project with links which include $SEQUENCE_ID$ tokens, it will present
+ the user with a warning message, as these links may need to be updated to use $DB_ACCESSION$, if
+ they were added before Jalview 2.10.1. The message lists the links which should be reviewed.
+ The warning can be turned off completely via a checkbox in the message dialog.
+ </p>
+ <p>
<strong>Regular Expression Substitution</strong><br> A url may
contain a string of the form $SEQUENCE_ID=/<em>regular
expression</em>/=$ or $DB_ACCESSION=/<em>regular expression</em>/=$.
<strong>Regular Expression Substitution</strong><br> A url may
contain a string of the form $SEQUENCE_ID=/<em>regular
expression</em>/=$ or $DB_ACCESSION=/<em>regular expression</em>/=$.