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JAL-2481 a smidgin more test coverage of findFeatures
author
gmungoc
<g.m.carstairs@dundee.ac.uk>
Wed, 23 Aug 2017 10:48:20 +0000
(11:48 +0100)
committer
gmungoc
<g.m.carstairs@dundee.ac.uk>
Wed, 23 Aug 2017 10:48:20 +0000
(11:48 +0100)
test/jalview/datamodel/SequenceTest.java
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diff --git
a/test/jalview/datamodel/SequenceTest.java
b/test/jalview/datamodel/SequenceTest.java
index
2f824ca
..
6844072
100644
(file)
--- a/
test/jalview/datamodel/SequenceTest.java
+++ b/
test/jalview/datamodel/SequenceTest.java
@@
-1358,6
+1358,10
@@
public class SequenceTest
SequenceFeature sfContactFG = new SequenceFeature("Disulfide Bond",
"desc", 13, 14, 2f, null);
sq.addSequenceFeature(sfContactFG);
SequenceFeature sfContactFG = new SequenceFeature("Disulfide Bond",
"desc", 13, 14, 2f, null);
sq.addSequenceFeature(sfContactFG);
+ // add single position feature at [I]
+ SequenceFeature sfI = new SequenceFeature("Disulfide Bond",
+ "desc", 16, 16, null);
+ sq.addSequenceFeature(sfI);
// no features in columns 1-2 (-A)
List<SequenceFeature> found = sq.findFeatures(1, 2);
// no features in columns 1-2 (-A)
List<SequenceFeature> found = sq.findFeatures(1, 2);
@@
-1384,6
+1388,11
@@
public class SequenceTest
// columns 10-11 (--) should find nothing
found = sq.findFeatures(10, 11);
assertEquals(0, found.size());
// columns 10-11 (--) should find nothing
found = sq.findFeatures(10, 11);
assertEquals(0, found.size());
+
+ // columns 14-14 (I) should find variant feature
+ found = sq.findFeatures(14, 14);
+ assertEquals(1, found.size());
+ assertTrue(found.contains(sfI));
}
@Test(groups = { "Functional" })
}
@Test(groups = { "Functional" })