jalview.release=releases/Release_2_11_2_Branch
-jalview.version=2.11.2.4
+jalview.version=2.11.2.5
<tocitem text="ClustalX" target="colours.clustal" />
<tocitem text="Zappo" target="colours.zappo" />
<tocitem text="Taylor" target="colours.taylor" />
- <tocitem text="gecos:flower" target="colours.gecos-flower" />
- <tocitem text="gecos:blossom" target="colours.gecos-blossom" />
- <tocitem text="gecos:sunset" target="colours.gecos-sunset" />
- <tocitem text="gecos:ocean" target="colours.gecos-ocean" />
+ <tocitem text="gecos Flower" target="colours.gecos-flower" />
+ <tocitem text="gecos Blossom" target="colours.gecos-blossom" />
+ <tocitem text="gecos Sunset" target="colours.gecos-sunset" />
+ <tocitem text="gecos Ocean" target="colours.gecos-ocean" />
<tocitem text="Hydrophobicity" target="colours.hydro" />
<tocitem text="Helix propensity" target="colours.helix" />
<tocitem text="Strand propensity" target="colours.strand" />
<td></td>
</tr>
<tr>
- <td>gecos:flower</td>
+ <td>gecos Flower</td>
<td bgcolor="#b18a51"></td>
<td bgcolor="#83bff1"></td>
<td></td>
</tr>
<tr>
- <td>gecos:blossom</td>
+ <td>gecos Blossom</td>
<td bgcolor="#8bc4b4"></td>
<td bgcolor="#fc9502"></td>
<td bgcolor="#b5c206"></td>
<td></td>
</tr>
<tr>
- <td>gecos:sunset</td>
+ <td>gecos Sunset</td>
<td bgcolor="#fea0fd"></td>
<td bgcolor="#85746a"></td>
<td bgcolor="#abc8f5"></td>
<td></td>
</tr>
<tr>
- <td>gecos:ocean</td>
+ <td>gecos Ocean</td>
<td bgcolor="#c6ca9b"></td>
<td bgcolor="#0ca0a8"></td>
<td bgcolor="#0adfc3"></td>
Bioinformatics Institute.<br> Nucleic Acids Res.
33(1):W25-W28 (2005) <br> <br>
</li>
+ <li>
+ <a href="https://docs.rfam.org/en/latest/citing-rfam.html#rfam-references">RFAM - a database of RNA families</a>
+ </li>
+ <li>
+ <a href="https://pfam-docs.readthedocs.io/en/latest/citing-pfam.html">PFAM - a database of protein families</a><br/>
+ <a href="https://academic.oup.com/nar/article/49/D1/D344/5958491">Data is provided by the Interpro Web API</a>
+ </li>
</ul>
</body>
</html>
---
version: 2.11.2.5
-date: 2022-10-01
+date: 2022-10-11
channel: "release"
---
-## New Features
-
## Issues Resolved
-- <!-- JAL-4073 --> Pfam Full and Seed alignment retrieval switched to the Interpro Server
+- <!-- JAL-4073 --> Pfam Full and Seed alignment retrieval switched to use http://www.ebi.ac.uk/interpro/api/
- <!-- JAL-4074 --> URLs reporting Content-Type as application/gzip not being recognized as a gzipped stream
- <!-- JAL-4063 --> Clustalx colour scheme renamed (back) to Clustal in the GUI
- <!-- JAL-4014 --> Spanish translations added for gecos colour schemes introduced in 2.11.2.4
--- /dev/null
+Jalview 2.11.2.5 is the fifth patch release in the 2.11.2 series. It includes several minor revisions, including a revised Pfam alignment retrieval client based on the Interpro web API, and a fix for a bug that mean't overlapping features of the same type assigned different colours would not be shown as coloured differently in the overview window.
+