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JAL-3032 JTable work; JSUtil.jQuery object; drag-drop;
authorhansonr <hansonr@stolaf.edu>
Mon, 2 Jul 2018 09:14:19 +0000 (10:14 +0100)
committerhansonr <hansonr@stolaf.edu>
Mon, 2 Jul 2018 09:14:19 +0000 (10:14 +0100)
reflect.Constructor; adds core:"NONE" to {project}/template.html

fixes drag-drop for first call in Firefox/win
fixes java.lang.reflect.Constructor for Integer

Remove the core:"NONE" if you do not want to see all the core files
separately.

examples/exampleFeatures.txt [deleted file] patch | blob | history
src/jalview/gui/FeatureSettings.java patch | blob | history
src/jalview/gui/JvSwingUtils.java patch | blob | history
src/jalview/gui/SeqPanel.java patch | blob | history
swingjs/SwingJS-site.zip patch | blob | history
template.html patch | blob | history

diff --git a/examples/exampleFeatures.txt b/examples/exampleFeatures.txt
deleted file mode 100755 (executable)
index 99af214..0000000
--- a/examples/exampleFeatures.txt
+++ /dev/null
@@ -1,369 +0,0 @@
-ST-TURN-IIL    blue
-GAMMA-TURN-CLASSIC     lightgray
-BETA-TURN-IR   9a6a94
-BETA-TURN-IL   d6a6ca
-BETA-BULGE     1dc451
-Pfam   dc206a
-PHOSPHORYLATION (S)    b974a5
-PHOSPHORYLATION (Y)    7d3881
-Cath   93b1d1
-ASX-TURN-IR    4ccc6e
-BETA-BULGE-LOOP-5      4066da
-CATMAT-4       4dc465
-CATMAT-3       3eb555
-GAMMA-TURN-INVERSE     7881c7
-SCHELLMANN-LOOP-6      a28bbb
-METAL  cc9900
-ALPHA-BETA-MOTIF       7bd649
-ASX-MOTIF      6addbb
-NEST-LR        3e16d0
-ASX-TURN-IIR   6a4062
-NEST-RL        3e16b2
-ASX-TURN-IIL   a67c98
-BETA-TURN-IIR  c79792
-PHOSPHORYLATION (T)    c88395
-BETA-TURN-IIL  8b5b50
-ST-MOTIF       ac25a1
-kdHydrophobicity       ccffcc|333300|-3.9|4.5|above|-2.0
-
-STARTFILTERS
-GAMMA-TURN-INVERSE     Label Contains PDB
-kdHydrophobicity       (Score LT 1.5) OR (Score GE 2.8)
-ENDFILTERS
-
-STARTGROUP     uniprot
-<html><a href="http://pfam.xfam.org/family/PF00111">Pfam family</a></html>     FER_CAPAA       -1      0       0       Pfam
-Iron-sulfur (2Fe-2S)   FER_CAPAA       -1      39      39      METAL
-Iron-sulfur (2Fe-2S)   FER_CAPAA       -1      44      44      METAL
-Iron-sulfur (2Fe-2S)   FER_CAPAA       -1      47      47      METAL
-Iron-sulfur (2Fe-2S)   FER_CAPAA       -1      77      77      METAL
-<html>Fer2 Status: True Positive <a href="http://pfam.xfam.org/family/PF00111">Pfam 8_8</a></html>     FER_CAPAA       -1      8       83      Pfam
-Ferredoxin_fold Status: True Positive  FER_CAPAA       -1      3       93      Cath
-Iron-sulfur (2Fe-2S)   FER_CAPAN       -1      86      86      METAL
-Iron-sulfur (2Fe-2S)   FER_CAPAN       -1      91      91      METAL
-Iron-sulfur (2Fe-2S)   FER_CAPAN       -1      94      94      METAL
-Iron-sulfur (2Fe-2S)   FER_CAPAN       -1      124     124     METAL
-<html>Fer2 Status: True Positive <a href="http://pfam.xfam.org/family/PF00111">Pfam 55_13</a></html>   FER_CAPAN       -1      55      130     Pfam
-Ferredoxin_fold Status: True Positive  FER_CAPAN       -1      45      140     Cath
-Iron-sulfur (2Fe-2S)   FER1_SOLLC      -1      86      86      METAL
-Iron-sulfur (2Fe-2S)   FER1_SOLLC      -1      91      91      METAL
-Iron-sulfur (2Fe-2S)   FER1_SOLLC      -1      94      94      METAL
-Iron-sulfur (2Fe-2S)   FER1_SOLLC      -1      124     124     METAL
-<html>Fer2 Status: True Positive <a href="http://pfam.xfam.org/family/PF00111">Pfam 55_13</a></html>   FER1_SOLLC      -1      55      130     Pfam
-Ferredoxin_fold Status: True Positive  FER1_SOLLC      -1      45      140     Cath
-<html>Fer2 Status: True Positive <a href="http://pfam.xfam.org/family/PF00111">Pfam 55_13</a></html>   Q93XJ9_SOLTU    -1      55      130     Pfam
-Ferredoxin_fold Status: True Positive  Q93XJ9_SOLTU    -1      45      140     Cath
-Iron-sulfur (2Fe-2S)   FER1_PEA        -1      91      91      METAL
-Iron-sulfur (2Fe-2S)   FER1_PEA        -1      96      96      METAL
-Iron-sulfur (2Fe-2S)   FER1_PEA        -1      99      99      METAL
-Iron-sulfur (2Fe-2S)   FER1_PEA        -1      129     129     METAL
-<html>Fer2 Status: True Positive <a href="http://pfam.xfam.org/family/PF00111">Pfam 60_13</a></html>   FER1_PEA        -1      60      135     Pfam
-Ferredoxin_fold Status: True Positive  FER1_PEA        -1      50      145     Cath
-<html>Fer2 Status: True Positive <a href="http://pfam.xfam.org/family/PF00111">Pfam 63_13</a></html>   Q7XA98_TRIPR    -1      63      138     Pfam
-Ferredoxin_fold Status: True Positive  Q7XA98_TRIPR    -1      53      148     Cath
-Iron-sulfur (2Fe-2S)   FER1_MESCR      -1      90      90      METAL
-Iron-sulfur (2Fe-2S)   FER1_MESCR      -1      95      95      METAL
-Iron-sulfur (2Fe-2S)   FER1_MESCR      -1      98      98      METAL
-Iron-sulfur (2Fe-2S)   FER1_MESCR      -1      128     128     METAL
-<html>Fer2 Status: True Positive <a href="http://pfam.xfam.org/family/PF00111">Pfam 59_13</a></html>   FER1_MESCR      -1      59      134     Pfam
-Ferredoxin_fold Status: True Positive  FER1_MESCR      -1      49      144     Cath
-Iron-sulfur (2Fe-2S)   FER1_SPIOL      -1      89      89      METAL
-Iron-sulfur (2Fe-2S)   FER1_SPIOL      -1      94      94      METAL
-Iron-sulfur (2Fe-2S)   FER1_SPIOL      -1      97      97      METAL
-Iron-sulfur (2Fe-2S)   FER1_SPIOL      -1      127     127     METAL
-<html>Fer2 Status: True Positive <a href="http://pfam.xfam.org/family/PF00111">Pfam 58_13</a></html>   FER1_SPIOL      -1      58      133     Pfam
-Ferredoxin_fold Status: True Positive  FER1_SPIOL      -1      48      143     Cath
-Iron-sulfur (2Fe-2S)   FER3_RAPSA      -1      39      39      METAL
-Iron-sulfur (2Fe-2S)   FER3_RAPSA      -1      44      44      METAL
-Iron-sulfur (2Fe-2S)   FER3_RAPSA      -1      47      47      METAL
-Iron-sulfur (2Fe-2S)   FER3_RAPSA      -1      77      77      METAL
-<html>Fer2 Status: True Positive <a href="http://pfam.xfam.org/family/PF00111">Pfam 8_8</a></html>     FER3_RAPSA      -1      8       83      Pfam
-Ferredoxin_fold Status: True Positive  FER3_RAPSA      -1      3       93      Cath
-Iron-sulfur (2Fe-2S)   FER_BRANA       -1      39      39      METAL
-Iron-sulfur (2Fe-2S)   FER_BRANA       -1      44      44      METAL
-Iron-sulfur (2Fe-2S)   FER_BRANA       -1      47      47      METAL
-Iron-sulfur (2Fe-2S)   FER_BRANA       -1      77      77      METAL
-<html>Fer2 Status: True Positive <a href="http://pfam.xfam.org/family/PF00111">Pfam 8_8</a></html>     FER_BRANA       -1      8       83      Pfam
-Ferredoxin_fold Status: True Positive  FER_BRANA       -1      2       96      Cath
-Iron-sulfur (2Fe-2S)   FER1_ARATH      -1      91      91      METAL
-Iron-sulfur (2Fe-2S)   FER1_ARATH      -1      96      96      METAL
-Iron-sulfur (2Fe-2S)   FER1_ARATH      -1      99      99      METAL
-Iron-sulfur (2Fe-2S)   FER1_ARATH      -1      129     129     METAL
-<html>Fer2 Status: True Positive <a href="http://pfam.xfam.org/family/PF00111">Pfam 60_13</a></html>   FER1_ARATH      -1      60      135     Pfam
-Ferredoxin_fold Status: True Positive  FER1_ARATH      -1      50      145     Cath
-<html>Fer2 Status: True Positive <a href="http://pfam.xfam.org/family/PF00111">Pfam 60_11</a></html>   Q93Z60_ARATH    -1      60      118     Pfam
-Ferredoxin_fold Status: True Positive  Q93Z60_ARATH    -1      52      118     Cath
-Iron-sulfur (2Fe-2S)   FER1_MAIZE      -1      91      91      METAL
-Iron-sulfur (2Fe-2S)   FER1_MAIZE      -1      96      96      METAL
-Iron-sulfur (2Fe-2S)   FER1_MAIZE      -1      99      99      METAL
-Iron-sulfur (2Fe-2S)   FER1_MAIZE      -1      129     129     METAL
-<html>Fer2 Status: True Positive <a href="http://pfam.xfam.org/family/PF00111">Pfam 60_13</a></html>   FER1_MAIZE      -1      60      135     Pfam
-Ferredoxin_fold Status: True Positive  FER1_MAIZE      -1      50      145     Cath
-<html>Fer2 Status: True Positive <a href="http://pfam.xfam.org/family/PF00111">Pfam 52_12</a></html>   O80429_MAIZE    -1      52      127     Pfam
-Ferredoxin_fold Status: True Positive  O80429_MAIZE    -1      42      137     Cath
-ENDGROUP       uniprot
-
-
-STARTGROUP     netphos
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P83527&amp;service=NetPhos-2.0">PHOSPHORYLATION (T) 89_8</a></html>       FER_CAPAA       -1      89      89      PHOSPHORYLATION (T)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q43517&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 22_2</a></html>       FER1_SOLLC      -1      22      22      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q43517&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 38_3</a></html>       FER1_SOLLC      -1      38      38      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q43517&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 102_10</a></html>     FER1_SOLLC      -1      102     102     PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q43517&amp;service=NetPhos-2.0">PHOSPHORYLATION (T) 136_13</a></html>     FER1_SOLLC      -1      136     136     PHOSPHORYLATION (T)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q93XJ9&amp;service=NetPhos-2.0">PHOSPHORYLATION (T) 136_13</a></html>     Q93XJ9_SOLTU    -1      136     136     PHOSPHORYLATION (T)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q93XJ9&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 22_2</a></html>       Q93XJ9_SOLTU    -1      22      22      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q93XJ9&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 38_3</a></html>       Q93XJ9_SOLTU    -1      38      38      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P09911&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 33_3</a></html>       FER1_PEA        -1      33      33      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P09911&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 42_4</a></html>       FER1_PEA        -1      42      42      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P09911&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 90_9</a></html>       FER1_PEA        -1      90      90      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P09911&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 114_11</a></html>     FER1_PEA        -1      114     114     PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P09911&amp;service=NetPhos-2.0">PHOSPHORYLATION (T) 4_</a></html> FER1_PEA        -1      4       4       PHOSPHORYLATION (T)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P09911&amp;service=NetPhos-2.0">PHOSPHORYLATION (T) 28_2</a></html>       FER1_PEA        -1      28      28      PHOSPHORYLATION (T)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P09911&amp;service=NetPhos-2.0">PHOSPHORYLATION (T) 141_14</a></html>     FER1_PEA        -1      141     141     PHOSPHORYLATION (T)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q7XA98&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 117_11</a></html>     Q7XA98_TRIPR    -1      117     117     PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q7XA98&amp;service=NetPhos-2.0">PHOSPHORYLATION (T) 137_13</a></html>     Q7XA98_TRIPR    -1      137     137     PHOSPHORYLATION (T)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q7XA98&amp;service=NetPhos-2.0">PHOSPHORYLATION (T) 144_14</a></html>     Q7XA98_TRIPR    -1      144     144     PHOSPHORYLATION (T)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q7XA98&amp;service=NetPhos-2.0">PHOSPHORYLATION (T) 30_3</a></html>       Q7XA98_TRIPR    -1      30      30      PHOSPHORYLATION (T)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q7XA98&amp;service=NetPhos-2.0">PHOSPHORYLATION (T) 31_3</a></html>       Q7XA98_TRIPR    -1      31      31      PHOSPHORYLATION (T)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q7XA98&amp;service=NetPhos-2.0">PHOSPHORYLATION (T) 4_</a></html> Q7XA98_TRIPR    -1      4       4       PHOSPHORYLATION (T)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q7XA98&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 45_4</a></html>       Q7XA98_TRIPR    -1      45      45      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q7XA98&amp;service=NetPhos-2.0">PHOSPHORYLATION (T) 46_4</a></html>       Q7XA98_TRIPR    -1      46      46      PHOSPHORYLATION (T)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q7XA98&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 93_9</a></html>       Q7XA98_TRIPR    -1      93      93      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P00221&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 88_8</a></html>       FER1_SPIOL      -1      88      88      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P00221&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 112_11</a></html>     FER1_SPIOL      -1      112     112     PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P00221&amp;service=NetPhos-2.0">PHOSPHORYLATION (T) 139_13</a></html>     FER1_SPIOL      -1      139     139     PHOSPHORYLATION (T)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P00221&amp;service=NetPhos-2.0">PHOSPHORYLATION (Y) 73_7</a></html>       FER1_SPIOL      -1      73      73      PHOSPHORYLATION (Y)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=FER2_ARATH&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 19_1</a></html>   FER2_ARATH      -1      19      19      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=FER2_ARATH&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 24_2</a></html>   FER2_ARATH      -1      24      24      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=FER2_ARATH&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 90_9</a></html>   FER2_ARATH      -1      90      90      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=FER2_ARATH&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 107_10</a></html> FER2_ARATH      -1      107     107     PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=FER2_ARATH&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 114_11</a></html> FER2_ARATH      -1      114     114     PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=FER2_ARATH&amp;service=NetPhos-2.0">PHOSPHORYLATION (T) 141_14</a></html> FER2_ARATH      -1      141     141     PHOSPHORYLATION (T)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=FER2_ARATH&amp;service=NetPhos-2.0">PHOSPHORYLATION (Y) 75_7</a></html>   FER2_ARATH      -1      75      75      PHOSPHORYLATION (Y)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P00227&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 38_3</a></html>       FER_BRANA       -1      38      38      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P00227&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 62_6</a></html>       FER_BRANA       -1      62      62      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P00227&amp;service=NetPhos-2.0">PHOSPHORYLATION (T) 89_8</a></html>       FER_BRANA       -1      89      89      PHOSPHORYLATION (T)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P00227&amp;service=NetPhos-2.0">PHOSPHORYLATION (Y) 23_2</a></html>       FER_BRANA       -1      23      23      PHOSPHORYLATION (Y)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q93Z60&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 107_10</a></html>     Q93Z60_ARATH    -1      107     107     PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q93Z60&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 114_11</a></html>     Q93Z60_ARATH    -1      114     114     PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q93Z60&amp;service=NetPhos-2.0">PHOSPHORYLATION (T) 21_2</a></html>       Q93Z60_ARATH    -1      21      21      PHOSPHORYLATION (T)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q93Z60&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 24_2</a></html>       Q93Z60_ARATH    -1      24      24      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=Q93Z60&amp;service=NetPhos-2.0">PHOSPHORYLATION (Y) 75_7</a></html>       Q93Z60_ARATH    -1      75      75      PHOSPHORYLATION (Y)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P27787&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 7_</a></html> FER1_MAIZE      -1      7       7       PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P27787&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 19_1</a></html>       FER1_MAIZE      -1      19      19      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P27787&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 44_4</a></html>       FER1_MAIZE      -1      44      44      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P27787&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 45_4</a></html>       FER1_MAIZE      -1      45      45      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P27787&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 90_9</a></html>       FER1_MAIZE      -1      90      90      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P27787&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 107_10</a></html>     FER1_MAIZE      -1      107     107     PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P27787&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 114_11</a></html>     FER1_MAIZE      -1      114     114     PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P27787&amp;service=NetPhos-2.0">PHOSPHORYLATION (T) 134_13</a></html>     FER1_MAIZE      -1      134     134     PHOSPHORYLATION (T)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P27787&amp;service=NetPhos-2.0">PHOSPHORYLATION (T) 141_14</a></html>     FER1_MAIZE      -1      141     141     PHOSPHORYLATION (T)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=P27787&amp;service=NetPhos-2.0">PHOSPHORYLATION (Y) 115_11</a></html>     FER1_MAIZE      -1      115     115     PHOSPHORYLATION (Y)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=O80429&amp;service=NetPhos-2.0">PHOSPHORYLATION (T) 133_13</a></html>     O80429_MAIZE    -1      133     133     PHOSPHORYLATION (T)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=O80429&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 82_8</a></html>       O80429_MAIZE    -1      82      82      PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=O80429&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 9_</a></html> O80429_MAIZE    -1      9       9       PHOSPHORYLATION (S)
-<html>High confidence server. Only hits with scores over 0.8 are reported. <a href="http://www.cbs.dtu.dk/cgi-bin/proview/webface-link?seqid=O80429&amp;service=NetPhos-2.0">PHOSPHORYLATION (S) 99_9</a></html>       O80429_MAIZE    -1      99      99      PHOSPHORYLATION (S)
-ENDGROUP       netphos
-
-STARTGROUP     s3dm
-<html>Found in PDBs: 1a70.,1a70. <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/alphabetamotif?gzip=false">ALPHA-BETA-MOTIF 115_11</a></html>  FER1_SPIOL      -1      115     119     ALPHA-BETA-MOTIF
-<html>Found in PDBs: 1a70. <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/asxturniil?gzip=false">ASX-TURN-IIL 107_10</a></html>        FER1_SPIOL      -1      107     109     ASX-TURN-IIL
-<html>Found in PDBs: 1a70. <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/asxturnir?gzip=false">ASX-TURN-IR 115_11</a></html>  FER1_SPIOL      -1      115     117     ASX-TURN-IR
-<html>Found in PDBs: 1a70. <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/betabulge?gzip=false">BETA-BULGE 102_10</a></html>   FER1_SPIOL      -1      102     103     BETA-BULGE
-<html>Found in PDBs: 1a70. <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/betaturnir?gzip=false">BETA-TURN-IR 59_6</a></html>  FER1_SPIOL      -1      59      62      BETA-TURN-IR
-<html>Found in PDBs: 1a70. <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/betaturnir?gzip=false">BETA-TURN-IR 69_7</a></html>  FER1_SPIOL      -1      69      72      BETA-TURN-IR
-<html>Found in PDBs: 1a70. <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/betaturnir?gzip=false">BETA-TURN-IR 95_9</a></html>  FER1_SPIOL      -1      95      98      BETA-TURN-IR
-<html>Found in PDBs: 1a70. <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/betaturnir?gzip=false">BETA-TURN-IR 108_11</a></html>        FER1_SPIOL      -1      108     111     BETA-TURN-IR
-<html>Found in PDBs: 1a70. <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/betaturnir?gzip=false">BETA-TURN-IR 125_12</a></html>        FER1_SPIOL      -1      125     128     BETA-TURN-IR
-<html>Found in PDBs: 1a70. <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/betaturnir?gzip=false">BETA-TURN-IR 141_14</a></html>        FER1_SPIOL      -1      141     144     BETA-TURN-IR
-<html>Found in PDBs: 1a70. <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/nestlr?gzip=false">NEST-LR 90_9</a></html>   FER1_SPIOL      -1      90      92      NEST-LR
-<html>Found in PDBs: 1a70. <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/nestlr?gzip=false">NEST-LR 92_9</a></html>   FER1_SPIOL      -1      92      94      NEST-LR
-<html>Found in PDBs: 1a70. <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/nestlr?gzip=false">NEST-LR 140_14</a></html> FER1_SPIOL      -1      140     142     NEST-LR
-<html>Found in PDBs: 1a70. <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/nestrl?gzip=false">NEST-RL 81_8</a></html>   FER1_SPIOL      -1      81      83      NEST-RL
-<html>Found in PDBs: 1a70. <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/nestrl?gzip=false">NEST-RL 89_9</a></html>   FER1_SPIOL      -1      89      91      NEST-RL
-<html>Found in PDBs: 1a70. <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/nestrl?gzip=false">NEST-RL 91_9</a></html>   FER1_SPIOL      -1      91      93      NEST-RL
-<html>Found in PDBs: 1a70. <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/nestrl?gzip=false">NEST-RL 121_12</a></html> FER1_SPIOL      -1      121     123     NEST-RL
-<html>Found in PDBs: 1a70. <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/schellmannloop6?gzip=false">SCHELLMANN-LOOP-6 78_8</a></html>        FER1_SPIOL      -1      78      83      SCHELLMANN-LOOP-6
-<html>Found in PDBs: 1a70. <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/schellmannloop6?gzip=false">SCHELLMANN-LOOP-6 118_12</a></html>      FER1_SPIOL      -1      118     123     SCHELLMANN-LOOP-6
-<html>Found in PDBs: 1a70. <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/stmotif?gzip=false">ST-MOTIF 59_6</a></html> FER1_SPIOL      -1      59      63      ST-MOTIF
-ALPHA-BETA-MOTIF       FER1_SPIOL      -1      65      69      ALPHA-BETA-MOTIF
-ASX-MOTIF      FER1_SPIOL      -1      65      69      ASX-MOTIF
-ASX-TURN-IIL   FER1_SPIOL      -1      57      59      ASX-TURN-IIL
-ASX-TURN-IR    FER1_SPIOL      -1      65      67      ASX-TURN-IR
-BETA-BULGE     FER1_SPIOL      -1      52      53      BETA-BULGE
-BETA-TURN-IR   FER1_SPIOL      -1      9       12      BETA-TURN-IR
-BETA-TURN-IR   FER1_SPIOL      -1      19      22      BETA-TURN-IR
-BETA-TURN-IR   FER1_SPIOL      -1      45      48      BETA-TURN-IR
-BETA-TURN-IR   FER1_SPIOL      -1      58      61      BETA-TURN-IR
-BETA-TURN-IR   FER1_SPIOL      -1      75      78      BETA-TURN-IR
-BETA-TURN-IR   FER1_SPIOL      -1      91      94      BETA-TURN-IR
-NEST-LR        FER1_SPIOL      -1      40      42      NEST-LR
-NEST-LR        FER1_SPIOL      -1      42      44      NEST-LR
-NEST-LR        FER1_SPIOL      -1      90      92      NEST-LR
-NEST-RL        FER1_SPIOL      -1      31      33      NEST-RL
-NEST-RL        FER1_SPIOL      -1      39      41      NEST-RL
-NEST-RL        FER1_SPIOL      -1      41      43      NEST-RL
-NEST-RL        FER1_SPIOL      -1      71      73      NEST-RL
-SCHELLMANN-LOOP-6      FER1_SPIOL      -1      28      33      SCHELLMANN-LOOP-6
-SCHELLMANN-LOOP-6      FER1_SPIOL      -1      68      73      SCHELLMANN-LOOP-6
-ST-MOTIF       FER1_SPIOL      -1      9       13      ST-MOTIF
-<html>Found in PDBs: 1gaq.B <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/alphabetamotif?gzip=false">ALPHA-BETA-MOTIF 76_8</a></html> FER1_MAIZE      -1      76      80      ALPHA-BETA-MOTIF
-<html>Found in PDBs: 1gaq.B <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/alphabetamotif?gzip=false">ALPHA-BETA-MOTIF 77_8</a></html> FER1_MAIZE      -1      77      81      ALPHA-BETA-MOTIF
-<html>Found in PDBs: 1gaq.B <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/betaturnir?gzip=false">BETA-TURN-IR 127_13</a></html>       FER1_MAIZE      -1      127     130     BETA-TURN-IR
-<html>Found in PDBs: 1gaq.B <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/gammaturnclassic?gzip=false">GAMMA-TURN-CLASSIC 113_11</a></html>   FER1_MAIZE      -1      113     115     GAMMA-TURN-CLASSIC
-<html>Found in PDBs: 1gaq.B <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/gammaturninverse?gzip=false">GAMMA-TURN-INVERSE 59_6</a></html>     FER1_MAIZE      -1      59      61      GAMMA-TURN-INVERSE
-<html>Found in PDBs: 1gaq.B <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/gammaturninverse?gzip=false">GAMMA-TURN-INVERSE 104_10</a></html>   FER1_MAIZE      -1      104     106     GAMMA-TURN-INVERSE
-<html>Found in PDBs: 1gaq.B <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/nestlr?gzip=false">NEST-LR 92_9</a></html>  FER1_MAIZE      -1      92      94      NEST-LR
-<html>Found in PDBs: 1gaq.B <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/nestlr?gzip=false">NEST-LR 94_9</a></html>  FER1_MAIZE      -1      94      96      NEST-LR
-<html>Found in PDBs: 1gaq.B <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/nestrl?gzip=false">NEST-RL 83_8</a></html>  FER1_MAIZE      -1      83      85      NEST-RL
-<html>Found in PDBs: 1gaq.B <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/nestrl?gzip=false">NEST-RL 91_9</a></html>  FER1_MAIZE      -1      91      93      NEST-RL
-<html>Found in PDBs: 1gaq.B <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/nestrl?gzip=false">NEST-RL 93_9</a></html>  FER1_MAIZE      -1      93      95      NEST-RL
-<html>Found in PDBs: 1gaq.B <a href="http://www.ebi.ac.uk/msd-srv/msdmotif/nestrl?gzip=false">NEST-RL 123_12</a></html>        FER1_MAIZE      -1      123     125     NEST-RL
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      132     136     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      174     178     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      175     179     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      180     184     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      181     185     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      214     218     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      215     219     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      218     222     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      223     227     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      246     250     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      251     255     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      254     258     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      258     262     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      279     283     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      280     284     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      289     293     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      296     300     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      299     303     ALPHA-BETA-MOTIF
-ASX-TURN-IIL   FER1_MAIZE      -1      160     162     ASX-TURN-IIL
-ASX-TURN-IIR   FER1_MAIZE      -1      107     109     ASX-TURN-IIR
-BETA-BULGE     FER1_MAIZE      -1      31      32      BETA-BULGE
-BETA-BULGE     FER1_MAIZE      -1      43      44      BETA-BULGE
-BETA-TURN-IIL  FER1_MAIZE      -1      170     173     BETA-TURN-IIL
-BETA-TURN-IIR  FER1_MAIZE      -1      71      74      BETA-TURN-IIR
-BETA-TURN-IIR  FER1_MAIZE      -1      140     143     BETA-TURN-IIR
-BETA-TURN-IIR  FER1_MAIZE      -1      274     277     BETA-TURN-IIR
-BETA-TURN-IL   FER1_MAIZE      -1      64      67      BETA-TURN-IL
-BETA-TURN-IR   FER1_MAIZE      -1      33      36      BETA-TURN-IR
-BETA-TURN-IR   FER1_MAIZE      -1      50      53      BETA-TURN-IR
-BETA-TURN-IR   FER1_MAIZE      -1      100     103     BETA-TURN-IR
-BETA-TURN-IR   FER1_MAIZE      -1      103     106     BETA-TURN-IR
-BETA-TURN-IR   FER1_MAIZE      -1      136     139     BETA-TURN-IR
-BETA-TURN-IR   FER1_MAIZE      -1      171     174     BETA-TURN-IR
-BETA-TURN-IR   FER1_MAIZE      -1      172     175     BETA-TURN-IR
-BETA-TURN-IR   FER1_MAIZE      -1      206     209     BETA-TURN-IR
-BETA-TURN-IR   FER1_MAIZE      -1      207     210     BETA-TURN-IR
-BETA-TURN-IR   FER1_MAIZE      -1      223     226     BETA-TURN-IR
-BETA-TURN-IR   FER1_MAIZE      -1      233     236     BETA-TURN-IR
-BETA-TURN-IR   FER1_MAIZE      -1      252     255     BETA-TURN-IR
-BETA-TURN-IR   FER1_MAIZE      -1      264     267     BETA-TURN-IR
-BETA-TURN-IR   FER1_MAIZE      -1      289     292     BETA-TURN-IR
-BETA-TURN-IR   FER1_MAIZE      -1      295     298     BETA-TURN-IR
-CATMAT-3       FER1_MAIZE      -1      20      22      CATMAT-3
-CATMAT-3       FER1_MAIZE      -1      47      49      CATMAT-3
-CATMAT-3       FER1_MAIZE      -1      97      99      CATMAT-3
-CATMAT-4       FER1_MAIZE      -1      189     192     CATMAT-4
-GAMMA-TURN-INVERSE     FER1_MAIZE      -1      68      70      GAMMA-TURN-INVERSE
-GAMMA-TURN-INVERSE     FER1_MAIZE      -1      84      86      GAMMA-TURN-INVERSE
-GAMMA-TURN-INVERSE     FER1_MAIZE      -1      232     234     GAMMA-TURN-INVERSE
-GAMMA-TURN-INVERSE     FER1_MAIZE      -1      240     242     GAMMA-TURN-INVERSE
-GAMMA-TURN-INVERSE     FER1_MAIZE      -1      244     246     GAMMA-TURN-INVERSE
-NEST-LR        FER1_MAIZE      -1      30      32      NEST-LR
-NEST-LR        FER1_MAIZE      -1      66      68      NEST-LR
-NEST-LR        FER1_MAIZE      -1      106     108     NEST-LR
-NEST-LR        FER1_MAIZE      -1      108     110     NEST-LR
-NEST-LR        FER1_MAIZE      -1      212     214     NEST-LR
-NEST-LR        FER1_MAIZE      -1      276     278     NEST-LR
-NEST-LR        FER1_MAIZE      -1      307     309     NEST-LR
-NEST-RL        FER1_MAIZE      -1      64      66      NEST-RL
-NEST-RL        FER1_MAIZE      -1      105     107     NEST-RL
-NEST-RL        FER1_MAIZE      -1      107     109     NEST-RL
-NEST-RL        FER1_MAIZE      -1      306     308     NEST-RL
-ST-TURN-IIL    FER1_MAIZE      -1      20      22      ST-TURN-IIL
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      24      28      ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      25      29      ALPHA-BETA-MOTIF
-BETA-TURN-IR   FER1_MAIZE      -1      75      78      BETA-TURN-IR
-GAMMA-TURN-CLASSIC     FER1_MAIZE      -1      61      63      GAMMA-TURN-CLASSIC
-GAMMA-TURN-INVERSE     FER1_MAIZE      -1      7       9       GAMMA-TURN-INVERSE
-GAMMA-TURN-INVERSE     FER1_MAIZE      -1      52      54      GAMMA-TURN-INVERSE
-NEST-LR        FER1_MAIZE      -1      40      42      NEST-LR
-NEST-LR        FER1_MAIZE      -1      42      44      NEST-LR
-NEST-RL        FER1_MAIZE      -1      31      33      NEST-RL
-NEST-RL        FER1_MAIZE      -1      39      41      NEST-RL
-NEST-RL        FER1_MAIZE      -1      41      43      NEST-RL
-NEST-RL        FER1_MAIZE      -1      71      73      NEST-RL
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      176     180     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      233     237     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      247     251     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      278     282     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      286     290     ALPHA-BETA-MOTIF
-ALPHA-BETA-MOTIF       FER1_MAIZE      -1      295     299     ALPHA-BETA-MOTIF
-ASX-MOTIF      FER1_MAIZE      -1      122     126     ASX-MOTIF
-ASX-MOTIF      FER1_MAIZE      -1      160     164     ASX-MOTIF
-ASX-TURN-IR    FER1_MAIZE      -1      122     124     ASX-TURN-IR
-BETA-BULGE-LOOP-5      FER1_MAIZE      -1      122     126     BETA-BULGE-LOOP-5
-BETA-BULGE-LOOP-5      FER1_MAIZE      -1      239     243     BETA-BULGE-LOOP-5
-BETA-TURN-IR   FER1_MAIZE      -1      122     125     BETA-TURN-IR
-BETA-TURN-IR   FER1_MAIZE      -1      160     163     BETA-TURN-IR
-BETA-TURN-IR   FER1_MAIZE      -1      239     242     BETA-TURN-IR
-BETA-TURN-IR   FER1_MAIZE      -1      261     264     BETA-TURN-IR
-CATMAT-3       FER1_MAIZE      -1      80      82      CATMAT-3
-CATMAT-3       FER1_MAIZE      -1      87      89      CATMAT-3
-CATMAT-3       FER1_MAIZE      -1      262     264     CATMAT-3
-NEST-RL        FER1_MAIZE      -1      124     126     NEST-RL
-NEST-RL        FER1_MAIZE      -1      241     243     NEST-RL
-NEST-RL        FER1_MAIZE      -1      292     294     NEST-RL
-ENDGROUP       s3dm
-
-STARTGROUP     kd
-A      Q93XJ9_SOLTU    -1      48      48      kdHydrophobicity        1.8
-A      Q93XJ9_SOLTU    -1      49      49      kdHydrophobicity        -0.8
-A      Q93XJ9_SOLTU    -1      50      50      kdHydrophobicity        -1.3
-A      Q93XJ9_SOLTU    -1      51      51      kdHydrophobicity        -3.9
-A      Q93XJ9_SOLTU    -1      52      52      kdHydrophobicity        4.2
-A      Q93XJ9_SOLTU    -1      53      53      kdHydrophobicity        -3.9
-A      Q93XJ9_SOLTU    -1      54      54      kdHydrophobicity        3.8
-A      Q93XJ9_SOLTU    -1      55      55      kdHydrophobicity        4.5
-A      Q93XJ9_SOLTU    -1      56      56      kdHydrophobicity        -0.7
-A      Q93XJ9_SOLTU    -1      57      57      kdHydrophobicity        -1.6
-A      Q93XJ9_SOLTU    -1      58      58      kdHydrophobicity        -3.5
-A      Q93XJ9_SOLTU    -1      59      59      kdHydrophobicity        -0.4
-A      Q93XJ9_SOLTU    -1      60      60      kdHydrophobicity        -1.6
-A      Q93XJ9_SOLTU    -1      61      61      kdHydrophobicity        4.5
-A      Q93XJ9_SOLTU    -1      62      62      kdHydrophobicity        -3.5
-A      Q93XJ9_SOLTU    -1      63      63      kdHydrophobicity        2.8
-A      FER1_SPIOL      -1      51      51      kdHydrophobicity        1.8
-A      FER1_SPIOL      -1      52      52      kdHydrophobicity        1.8
-A      FER1_SPIOL      -1      53      53      kdHydrophobicity        -1.3
-A      FER1_SPIOL      -1      54      54      kdHydrophobicity        -3.9
-A      FER1_SPIOL      -1      55      55      kdHydrophobicity        4.2
-A      FER1_SPIOL      -1      56      56      kdHydrophobicity        -0.7
-A      FER1_SPIOL      -1      57      57      kdHydrophobicity        3.8
-A      FER1_SPIOL      -1      58      58      kdHydrophobicity        4.2
-A      FER1_SPIOL      -1      59      59      kdHydrophobicity        -0.7
-A      FER1_SPIOL      -1      60      60      kdHydrophobicity        -1.6
-A      FER1_SPIOL      -1      61      61      kdHydrophobicity        -0.7
-A      FER1_SPIOL      -1      62      62      kdHydrophobicity        -0.4
-A      FER1_SPIOL      -1      63      63      kdHydrophobicity        -3.5
-A      FER1_SPIOL      -1      64      64      kdHydrophobicity        4.2
-A      FER1_SPIOL      -1      65      65      kdHydrophobicity        -3.5
-A      FER1_SPIOL      -1      66      66      kdHydrophobicity        2.8
-C      FER1_MAIZE      -1      53      53      kdHydrophobicity        1.8
-C      FER1_MAIZE      -1      54      54      kdHydrophobicity        -0.7
-C      FER1_MAIZE      -1      55      55      kdHydrophobicity        -1.3
-C      FER1_MAIZE      -1      56      56      kdHydrophobicity        -3.5
-C      FER1_MAIZE      -1      57      57      kdHydrophobicity        4.2
-C      FER1_MAIZE      -1      58      58      kdHydrophobicity        -3.9
-C      FER1_MAIZE      -1      59      59      kdHydrophobicity        3.8
-C      FER1_MAIZE      -1      60      60      kdHydrophobicity        4.5
-C      FER1_MAIZE      -1      61      61      kdHydrophobicity        -0.7
-C      FER1_MAIZE      -1      62      62      kdHydrophobicity        -1.6
-C      FER1_MAIZE      -1      63      63      kdHydrophobicity        -3.5
-C      FER1_MAIZE      -1      64      64      kdHydrophobicity        -0.4
-C      FER1_MAIZE      -1      65      65      kdHydrophobicity        -3.5
-C      FER1_MAIZE      -1      66      66      kdHydrophobicity        4.2
-C      FER1_MAIZE      -1      67      67      kdHydrophobicity        -3.5
-C      FER1_MAIZE      -1      68      68      kdHydrophobicity        3.8
-ENDGROUP       kd
diff --git a/src/jalview/gui/FeatureSettings.java b/src/jalview/gui/FeatureSettings.java
index 75e8ec9..5709ab5 100644 (file)
--- a/src/jalview/gui/FeatureSettings.java
+++ b/src/jalview/gui/FeatureSettings.java
@@ -233,7 +233,7 @@ public class FeatureSettings extends JPanel
 
     table.setDefaultEditor(FeatureMatcherSet.class, new FilterEditor(this));
     table.setDefaultRenderer(FeatureMatcherSet.class, new FilterRenderer());
-
+    
     TableColumn colourColumn = new TableColumn(COLOUR_COLUMN, 75,
             new ColorRenderer(), new ColorEditor(this));
     table.addColumn(colourColumn);
diff --git a/src/jalview/gui/JvSwingUtils.java b/src/jalview/gui/JvSwingUtils.java
index 4658668..d44080a 100644 (file)
--- a/src/jalview/gui/JvSwingUtils.java
+++ b/src/jalview/gui/JvSwingUtils.java
@@ -96,8 +96,19 @@ public final class JvSwingUtils
     }
 
     return (enclose ? "<html>" : "")
-            + "<style> p.ttip {width: 350; text-align: justify; word-wrap: break-word;}</style><p class=\"ttip\">"
-            + ttext + "</p>" + ((enclose ? "</html>" : ""));
+            
+     // BH 2018
+            
+            + "<style> div.ttip {width:350px;white-space:pre-wrap;padding:2px;overflow-wrap:break-word;}</style><div class=\"ttip\">"
+            
+//            + "<style> p.ttip {width:350px;margin:-14px 0px -14px 0px;padding:2px;overflow-wrap:break-word;}"
+//            + "</style><p class=\"ttip\">"
+                        
+            + ttext
+            
+            + " </div>"
+//            + "</p>"
+            + ((enclose ? "</html>" : ""));
 
   }
 
diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java
index 8b2e7bc..18c6acc 100644 (file)
--- a/src/jalview/gui/SeqPanel.java
+++ b/src/jalview/gui/SeqPanel.java
@@ -62,7 +62,9 @@ import java.awt.event.MouseWheelListener;
 import java.util.Collections;
 import java.util.List;
 
+import javax.swing.JLabel;
 import javax.swing.JPanel;
+import javax.swing.JToolTip;
 import javax.swing.SwingUtilities;
 import javax.swing.ToolTipManager;
 
@@ -158,6 +160,8 @@ public class SeqPanel extends JPanel
     ToolTipManager.sharedInstance().registerComponent(this);
     ToolTipManager.sharedInstance().setInitialDelay(0);
     ToolTipManager.sharedInstance().setDismissDelay(10000);
+    
+    
     this.av = viewport;
     setBackground(Color.white);
 
@@ -694,6 +698,8 @@ public class SeqPanel extends JPanel
 
   String lastMessage;
 
+  private String formattedTooltipText;
+
   @Override
   public void mouseOverSequence(SequenceI sequence, int index, int pos)
   {
@@ -863,16 +869,20 @@ public class SeqPanel extends JPanel
       String textString = tooltipText.toString();
       if (lastTooltip == null || !lastTooltip.equals(textString))
       {
-        String formattedTooltipText = JvSwingUtils.wrapTooltip(true,
+        formattedTooltipText = JvSwingUtils.wrapTooltip(true,
                 textString);
         setToolTipText(formattedTooltipText);
+        
         lastTooltip = textString;
       }
     }
   }
 
+  
   private Point lastp = null;
 
+  private JToolTip tempTip = new JLabel().createToolTip();
+
   /*
    * (non-Javadoc)
    * 
@@ -881,19 +891,31 @@ public class SeqPanel extends JPanel
   @Override
   public Point getToolTipLocation(MouseEvent event)
   {
-    int x = event.getX(), w = getWidth();
-    int wdth = (w - x < 200) ? -(w / 2) : 5; // switch sides when tooltip is too
-    // close to edge
+    // BH 2018
+
+    if (tooltipText == null || tooltipText.length() == 6)
+      return null;
+
+    if (lastp != null && event.isShiftDown())
+      return lastp;
+
     Point p = lastp;
-    if (!event.isShiftDown() || p == null)
-    {
-      p = (tooltipText != null && tooltipText.length() > 6)
-              ? new Point(event.getX() + wdth, event.getY() - 20)
-              : null;
-    }
+    int x = event.getX();
+    int y = event.getY();
+    int w = getWidth();
+
+    tempTip.setTipText(formattedTooltipText);
+    int tipWidth = (int) tempTip.getPreferredSize().getWidth();
+    
+    // was      x += (w - x < 200) ? -(w / 2) : 5;
+    x = (x + tipWidth < w ? x + 10 : w - tipWidth);
+    p = new Point(x, y + 20); // BH 2018 was - 20?
     /*
      * TODO: try to modify position region is not obcured by tooltip
+     * 
+     * Done? 
      */
+
     return lastp = p;
   }
 
diff --git a/swingjs/SwingJS-site.zip b/swingjs/SwingJS-site.zip
index edd8197..ddaa87b 100644 (file)
Binary files a/swingjs/SwingJS-site.zip and b/swingjs/SwingJS-site.zip differ
diff --git a/template.html b/template.html
index 5005060..2a22a77 100644 (file)
--- a/template.html
+++ b/template.html
@@ -8,6 +8,7 @@ if (!self.SwingJS)alert('swingjs2.js was not found. It needs to be in swingjs fo
 Info = {
   code: _CODE_,
   main: _MAIN_,
+  core: "NONE",
        width: 850,
        height: 550,
   readyFunction: null,