After branch merge
authoramwaterhouse <Andrew Waterhouse>
Tue, 6 Dec 2005 11:41:09 +0000 (11:41 +0000)
committeramwaterhouse <Andrew Waterhouse>
Tue, 6 Dec 2005 11:41:09 +0000 (11:41 +0000)
src/uk/ac/ebi/www/Data.java [new file with mode: 0755]
src/uk/ac/ebi/www/InputParams.java [new file with mode: 0755]
src/uk/ac/ebi/www/WSFile.java [new file with mode: 0755]
src/uk/ac/ebi/www/WSWUBlast.java [new file with mode: 0755]
src/uk/ac/ebi/www/WSWUBlastService.java [new file with mode: 0755]
src/uk/ac/ebi/www/WSWUBlastServiceLocator.java [new file with mode: 0755]
src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java [new file with mode: 0755]

diff --git a/src/uk/ac/ebi/www/Data.java b/src/uk/ac/ebi/www/Data.java
new file mode 100755 (executable)
index 0000000..bc8ec84
--- /dev/null
@@ -0,0 +1,120 @@
+/**
+ * Data.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis WSDL2Java emitter.
+ */
+
+package uk.ac.ebi.www;
+
+public class Data  implements java.io.Serializable {
+    private java.lang.String type;
+    private java.lang.String content;
+
+    public Data() {
+    }
+
+    public java.lang.String getType() {
+        return type;
+    }
+
+    public void setType(java.lang.String type) {
+        this.type = type;
+    }
+
+    public java.lang.String getContent() {
+        return content;
+    }
+
+    public void setContent(java.lang.String content) {
+        this.content = content;
+    }
+
+    private java.lang.Object __equalsCalc = null;
+    public synchronized boolean equals(java.lang.Object obj) {
+        if (!(obj instanceof Data)) return false;
+        Data other = (Data) obj;
+        if (obj == null) return false;
+        if (this == obj) return true;
+        if (__equalsCalc != null) {
+            return (__equalsCalc == obj);
+        }
+        __equalsCalc = obj;
+        boolean _equals;
+        _equals = true && 
+            ((type==null && other.getType()==null) || 
+             (type!=null &&
+              type.equals(other.getType()))) &&
+            ((content==null && other.getContent()==null) || 
+             (content!=null &&
+              content.equals(other.getContent())));
+        __equalsCalc = null;
+        return _equals;
+    }
+
+    private boolean __hashCodeCalc = false;
+    public synchronized int hashCode() {
+        if (__hashCodeCalc) {
+            return 0;
+        }
+        __hashCodeCalc = true;
+        int _hashCode = 1;
+        if (getType() != null) {
+            _hashCode += getType().hashCode();
+        }
+        if (getContent() != null) {
+            _hashCode += getContent().hashCode();
+        }
+        __hashCodeCalc = false;
+        return _hashCode;
+    }
+
+    // Type metadata
+    private static org.apache.axis.description.TypeDesc typeDesc =
+        new org.apache.axis.description.TypeDesc(Data.class);
+
+    static {
+        org.apache.axis.description.FieldDesc field = new org.apache.axis.description.ElementDesc();
+        field.setFieldName("type");
+        field.setXmlName(new javax.xml.namespace.QName("", "type"));
+        field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+        typeDesc.addFieldDesc(field);
+        field = new org.apache.axis.description.ElementDesc();
+        field.setFieldName("content");
+        field.setXmlName(new javax.xml.namespace.QName("", "content"));
+        field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+        typeDesc.addFieldDesc(field);
+    };
+
+    /**
+     * Return type metadata object
+     */
+    public static org.apache.axis.description.TypeDesc getTypeDesc() {
+        return typeDesc;
+    }
+
+    /**
+     * Get Custom Serializer
+     */
+    public static org.apache.axis.encoding.Serializer getSerializer(
+           java.lang.String mechType, 
+           java.lang.Class _javaType,  
+           javax.xml.namespace.QName _xmlType) {
+        return 
+          new  org.apache.axis.encoding.ser.BeanSerializer(
+            _javaType, _xmlType, typeDesc);
+    }
+
+    /**
+     * Get Custom Deserializer
+     */
+    public static org.apache.axis.encoding.Deserializer getDeserializer(
+           java.lang.String mechType, 
+           java.lang.Class _javaType,  
+           javax.xml.namespace.QName _xmlType) {
+        return 
+          new  org.apache.axis.encoding.ser.BeanDeserializer(
+            _javaType, _xmlType, typeDesc);
+    }
+
+}
diff --git a/src/uk/ac/ebi/www/InputParams.java b/src/uk/ac/ebi/www/InputParams.java
new file mode 100755 (executable)
index 0000000..15de139
--- /dev/null
@@ -0,0 +1,376 @@
+/**
+ * InputParams.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis WSDL2Java emitter.
+ */
+
+package uk.ac.ebi.www;
+
+public class InputParams  implements java.io.Serializable {
+    private java.lang.String program;
+    private java.lang.String database;
+    private java.lang.String matrix;
+    private float exp;
+    private boolean echofilter;
+    private java.lang.String filter;
+    private int numal;
+    private int scores;
+    private java.lang.String sensitivity;
+    private java.lang.String sort;
+    private java.lang.String stats;
+    private java.lang.String strand;
+    private java.lang.String outformat;
+    private int topcombon;
+    private boolean async;
+    private java.lang.String email;
+
+    public InputParams() {
+    }
+
+    public java.lang.String getProgram() {
+        return program;
+    }
+
+    public void setProgram(java.lang.String program) {
+        this.program = program;
+    }
+
+    public java.lang.String getDatabase() {
+        return database;
+    }
+
+    public void setDatabase(java.lang.String database) {
+        this.database = database;
+    }
+
+    public java.lang.String getMatrix() {
+        return matrix;
+    }
+
+    public void setMatrix(java.lang.String matrix) {
+        this.matrix = matrix;
+    }
+
+    public float getExp() {
+        return exp;
+    }
+
+    public void setExp(float exp) {
+        this.exp = exp;
+    }
+
+    public boolean isEchofilter() {
+        return echofilter;
+    }
+
+    public void setEchofilter(boolean echofilter) {
+        this.echofilter = echofilter;
+    }
+
+    public java.lang.String getFilter() {
+        return filter;
+    }
+
+    public void setFilter(java.lang.String filter) {
+        this.filter = filter;
+    }
+
+    public int getNumal() {
+        return numal;
+    }
+
+    public void setNumal(int numal) {
+        this.numal = numal;
+    }
+
+    public int getScores() {
+        return scores;
+    }
+
+    public void setScores(int scores) {
+        this.scores = scores;
+    }
+
+    public java.lang.String getSensitivity() {
+        return sensitivity;
+    }
+
+    public void setSensitivity(java.lang.String sensitivity) {
+        this.sensitivity = sensitivity;
+    }
+
+    public java.lang.String getSort() {
+        return sort;
+    }
+
+    public void setSort(java.lang.String sort) {
+        this.sort = sort;
+    }
+
+    public java.lang.String getStats() {
+        return stats;
+    }
+
+    public void setStats(java.lang.String stats) {
+        this.stats = stats;
+    }
+
+    public java.lang.String getStrand() {
+        return strand;
+    }
+
+    public void setStrand(java.lang.String strand) {
+        this.strand = strand;
+    }
+
+    public java.lang.String getOutformat() {
+        return outformat;
+    }
+
+    public void setOutformat(java.lang.String outformat) {
+        this.outformat = outformat;
+    }
+
+    public int getTopcombon() {
+        return topcombon;
+    }
+
+    public void setTopcombon(int topcombon) {
+        this.topcombon = topcombon;
+    }
+
+    public boolean isAsync() {
+        return async;
+    }
+
+    public void setAsync(boolean async) {
+        this.async = async;
+    }
+
+    public java.lang.String getEmail() {
+        return email;
+    }
+
+    public void setEmail(java.lang.String email) {
+        this.email = email;
+    }
+
+    private java.lang.Object __equalsCalc = null;
+    public synchronized boolean equals(java.lang.Object obj) {
+        if (!(obj instanceof InputParams)) return false;
+        InputParams other = (InputParams) obj;
+        if (obj == null) return false;
+        if (this == obj) return true;
+        if (__equalsCalc != null) {
+            return (__equalsCalc == obj);
+        }
+        __equalsCalc = obj;
+        boolean _equals;
+        _equals = true && 
+            ((program==null && other.getProgram()==null) || 
+             (program!=null &&
+              program.equals(other.getProgram()))) &&
+            ((database==null && other.getDatabase()==null) || 
+             (database!=null &&
+              database.equals(other.getDatabase()))) &&
+            ((matrix==null && other.getMatrix()==null) || 
+             (matrix!=null &&
+              matrix.equals(other.getMatrix()))) &&
+            exp == other.getExp() &&
+            echofilter == other.isEchofilter() &&
+            ((filter==null && other.getFilter()==null) || 
+             (filter!=null &&
+              filter.equals(other.getFilter()))) &&
+            numal == other.getNumal() &&
+            scores == other.getScores() &&
+            ((sensitivity==null && other.getSensitivity()==null) || 
+             (sensitivity!=null &&
+              sensitivity.equals(other.getSensitivity()))) &&
+            ((sort==null && other.getSort()==null) || 
+             (sort!=null &&
+              sort.equals(other.getSort()))) &&
+            ((stats==null && other.getStats()==null) || 
+             (stats!=null &&
+              stats.equals(other.getStats()))) &&
+            ((strand==null && other.getStrand()==null) || 
+             (strand!=null &&
+              strand.equals(other.getStrand()))) &&
+            ((outformat==null && other.getOutformat()==null) || 
+             (outformat!=null &&
+              outformat.equals(other.getOutformat()))) &&
+            topcombon == other.getTopcombon() &&
+            async == other.isAsync() &&
+            ((email==null && other.getEmail()==null) || 
+             (email!=null &&
+              email.equals(other.getEmail())));
+        __equalsCalc = null;
+        return _equals;
+    }
+
+    private boolean __hashCodeCalc = false;
+    public synchronized int hashCode() {
+        if (__hashCodeCalc) {
+            return 0;
+        }
+        __hashCodeCalc = true;
+        int _hashCode = 1;
+        if (getProgram() != null) {
+            _hashCode += getProgram().hashCode();
+        }
+        if (getDatabase() != null) {
+            _hashCode += getDatabase().hashCode();
+        }
+        if (getMatrix() != null) {
+            _hashCode += getMatrix().hashCode();
+        }
+        _hashCode += new Float(getExp()).hashCode();
+        _hashCode += new Boolean(isEchofilter()).hashCode();
+        if (getFilter() != null) {
+            _hashCode += getFilter().hashCode();
+        }
+        _hashCode += getNumal();
+        _hashCode += getScores();
+        if (getSensitivity() != null) {
+            _hashCode += getSensitivity().hashCode();
+        }
+        if (getSort() != null) {
+            _hashCode += getSort().hashCode();
+        }
+        if (getStats() != null) {
+            _hashCode += getStats().hashCode();
+        }
+        if (getStrand() != null) {
+            _hashCode += getStrand().hashCode();
+        }
+        if (getOutformat() != null) {
+            _hashCode += getOutformat().hashCode();
+        }
+        _hashCode += getTopcombon();
+        _hashCode += new Boolean(isAsync()).hashCode();
+        if (getEmail() != null) {
+            _hashCode += getEmail().hashCode();
+        }
+        __hashCodeCalc = false;
+        return _hashCode;
+    }
+
+    // Type metadata
+    private static org.apache.axis.description.TypeDesc typeDesc =
+        new org.apache.axis.description.TypeDesc(InputParams.class);
+
+    static {
+        org.apache.axis.description.FieldDesc field = new org.apache.axis.description.ElementDesc();
+        field.setFieldName("program");
+        field.setXmlName(new javax.xml.namespace.QName("", "program"));
+        field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+        typeDesc.addFieldDesc(field);
+        field = new org.apache.axis.description.ElementDesc();
+        field.setFieldName("database");
+        field.setXmlName(new javax.xml.namespace.QName("", "database"));
+        field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+        typeDesc.addFieldDesc(field);
+        field = new org.apache.axis.description.ElementDesc();
+        field.setFieldName("matrix");
+        field.setXmlName(new javax.xml.namespace.QName("", "matrix"));
+        field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+        typeDesc.addFieldDesc(field);
+        field = new org.apache.axis.description.ElementDesc();
+        field.setFieldName("exp");
+        field.setXmlName(new javax.xml.namespace.QName("", "exp"));
+        field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "float"));
+        typeDesc.addFieldDesc(field);
+        field = new org.apache.axis.description.ElementDesc();
+        field.setFieldName("echofilter");
+        field.setXmlName(new javax.xml.namespace.QName("", "echofilter"));
+        field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+        typeDesc.addFieldDesc(field);
+        field = new org.apache.axis.description.ElementDesc();
+        field.setFieldName("filter");
+        field.setXmlName(new javax.xml.namespace.QName("", "filter"));
+        field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+        typeDesc.addFieldDesc(field);
+        field = new org.apache.axis.description.ElementDesc();
+        field.setFieldName("numal");
+        field.setXmlName(new javax.xml.namespace.QName("", "numal"));
+        field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "int"));
+        typeDesc.addFieldDesc(field);
+        field = new org.apache.axis.description.ElementDesc();
+        field.setFieldName("scores");
+        field.setXmlName(new javax.xml.namespace.QName("", "scores"));
+        field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "int"));
+        typeDesc.addFieldDesc(field);
+        field = new org.apache.axis.description.ElementDesc();
+        field.setFieldName("sensitivity");
+        field.setXmlName(new javax.xml.namespace.QName("", "sensitivity"));
+        field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+        typeDesc.addFieldDesc(field);
+        field = new org.apache.axis.description.ElementDesc();
+        field.setFieldName("sort");
+        field.setXmlName(new javax.xml.namespace.QName("", "sort"));
+        field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+        typeDesc.addFieldDesc(field);
+        field = new org.apache.axis.description.ElementDesc();
+        field.setFieldName("stats");
+        field.setXmlName(new javax.xml.namespace.QName("", "stats"));
+        field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+        typeDesc.addFieldDesc(field);
+        field = new org.apache.axis.description.ElementDesc();
+        field.setFieldName("strand");
+        field.setXmlName(new javax.xml.namespace.QName("", "strand"));
+        field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+        typeDesc.addFieldDesc(field);
+        field = new org.apache.axis.description.ElementDesc();
+        field.setFieldName("outformat");
+        field.setXmlName(new javax.xml.namespace.QName("", "outformat"));
+        field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+        typeDesc.addFieldDesc(field);
+        field = new org.apache.axis.description.ElementDesc();
+        field.setFieldName("topcombon");
+        field.setXmlName(new javax.xml.namespace.QName("", "topcombon"));
+        field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "int"));
+        typeDesc.addFieldDesc(field);
+        field = new org.apache.axis.description.ElementDesc();
+        field.setFieldName("async");
+        field.setXmlName(new javax.xml.namespace.QName("", "async"));
+        field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "boolean"));
+        typeDesc.addFieldDesc(field);
+        field = new org.apache.axis.description.ElementDesc();
+        field.setFieldName("email");
+        field.setXmlName(new javax.xml.namespace.QName("", "email"));
+        field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+        typeDesc.addFieldDesc(field);
+    };
+
+    /**
+     * Return type metadata object
+     */
+    public static org.apache.axis.description.TypeDesc getTypeDesc() {
+        return typeDesc;
+    }
+
+    /**
+     * Get Custom Serializer
+     */
+    public static org.apache.axis.encoding.Serializer getSerializer(
+           java.lang.String mechType, 
+           java.lang.Class _javaType,  
+           javax.xml.namespace.QName _xmlType) {
+        return 
+          new  org.apache.axis.encoding.ser.BeanSerializer(
+            _javaType, _xmlType, typeDesc);
+    }
+
+    /**
+     * Get Custom Deserializer
+     */
+    public static org.apache.axis.encoding.Deserializer getDeserializer(
+           java.lang.String mechType, 
+           java.lang.Class _javaType,  
+           javax.xml.namespace.QName _xmlType) {
+        return 
+          new  org.apache.axis.encoding.ser.BeanDeserializer(
+            _javaType, _xmlType, typeDesc);
+    }
+
+}
diff --git a/src/uk/ac/ebi/www/WSFile.java b/src/uk/ac/ebi/www/WSFile.java
new file mode 100755 (executable)
index 0000000..4344b7e
--- /dev/null
@@ -0,0 +1,120 @@
+/**
+ * WSFile.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis WSDL2Java emitter.
+ */
+
+package uk.ac.ebi.www;
+
+public class WSFile  implements java.io.Serializable {
+    private java.lang.String type;
+    private java.lang.String ext;
+
+    public WSFile() {
+    }
+
+    public java.lang.String getType() {
+        return type;
+    }
+
+    public void setType(java.lang.String type) {
+        this.type = type;
+    }
+
+    public java.lang.String getExt() {
+        return ext;
+    }
+
+    public void setExt(java.lang.String ext) {
+        this.ext = ext;
+    }
+
+    private java.lang.Object __equalsCalc = null;
+    public synchronized boolean equals(java.lang.Object obj) {
+        if (!(obj instanceof WSFile)) return false;
+        WSFile other = (WSFile) obj;
+        if (obj == null) return false;
+        if (this == obj) return true;
+        if (__equalsCalc != null) {
+            return (__equalsCalc == obj);
+        }
+        __equalsCalc = obj;
+        boolean _equals;
+        _equals = true && 
+            ((type==null && other.getType()==null) || 
+             (type!=null &&
+              type.equals(other.getType()))) &&
+            ((ext==null && other.getExt()==null) || 
+             (ext!=null &&
+              ext.equals(other.getExt())));
+        __equalsCalc = null;
+        return _equals;
+    }
+
+    private boolean __hashCodeCalc = false;
+    public synchronized int hashCode() {
+        if (__hashCodeCalc) {
+            return 0;
+        }
+        __hashCodeCalc = true;
+        int _hashCode = 1;
+        if (getType() != null) {
+            _hashCode += getType().hashCode();
+        }
+        if (getExt() != null) {
+            _hashCode += getExt().hashCode();
+        }
+        __hashCodeCalc = false;
+        return _hashCode;
+    }
+
+    // Type metadata
+    private static org.apache.axis.description.TypeDesc typeDesc =
+        new org.apache.axis.description.TypeDesc(WSFile.class);
+
+    static {
+        org.apache.axis.description.FieldDesc field = new org.apache.axis.description.ElementDesc();
+        field.setFieldName("type");
+        field.setXmlName(new javax.xml.namespace.QName("", "type"));
+        field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+        typeDesc.addFieldDesc(field);
+        field = new org.apache.axis.description.ElementDesc();
+        field.setFieldName("ext");
+        field.setXmlName(new javax.xml.namespace.QName("", "ext"));
+        field.setXmlType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"));
+        typeDesc.addFieldDesc(field);
+    };
+
+    /**
+     * Return type metadata object
+     */
+    public static org.apache.axis.description.TypeDesc getTypeDesc() {
+        return typeDesc;
+    }
+
+    /**
+     * Get Custom Serializer
+     */
+    public static org.apache.axis.encoding.Serializer getSerializer(
+           java.lang.String mechType, 
+           java.lang.Class _javaType,  
+           javax.xml.namespace.QName _xmlType) {
+        return 
+          new  org.apache.axis.encoding.ser.BeanSerializer(
+            _javaType, _xmlType, typeDesc);
+    }
+
+    /**
+     * Get Custom Deserializer
+     */
+    public static org.apache.axis.encoding.Deserializer getDeserializer(
+           java.lang.String mechType, 
+           java.lang.Class _javaType,  
+           javax.xml.namespace.QName _xmlType) {
+        return 
+          new  org.apache.axis.encoding.ser.BeanDeserializer(
+            _javaType, _xmlType, typeDesc);
+    }
+
+}
diff --git a/src/uk/ac/ebi/www/WSWUBlast.java b/src/uk/ac/ebi/www/WSWUBlast.java
new file mode 100755 (executable)
index 0000000..becd6ea
--- /dev/null
@@ -0,0 +1,18 @@
+/**
+ * WSWUBlast.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis WSDL2Java emitter.
+ */
+
+package uk.ac.ebi.www;
+
+public interface WSWUBlast extends java.rmi.Remote {
+    public java.lang.String runWUBlast(uk.ac.ebi.www.InputParams params, uk.ac.ebi.www.Data[] content) throws java.rmi.RemoteException;
+    public java.lang.String checkStatus(java.lang.String jobid) throws java.rmi.RemoteException;
+    public byte[] poll(java.lang.String jobid, java.lang.String type) throws java.rmi.RemoteException;
+    public uk.ac.ebi.www.WSFile[] getResults(java.lang.String jobid) throws java.rmi.RemoteException;
+    public byte[] test(java.lang.String jobid, java.lang.String type) throws java.rmi.RemoteException;
+    public byte[] polljob(java.lang.String jobid, java.lang.String outformat) throws java.rmi.RemoteException;
+    public byte[] doWUBlast(uk.ac.ebi.www.InputParams params, byte[] content) throws java.rmi.RemoteException;
+}
diff --git a/src/uk/ac/ebi/www/WSWUBlastService.java b/src/uk/ac/ebi/www/WSWUBlastService.java
new file mode 100755 (executable)
index 0000000..fcc8b16
--- /dev/null
@@ -0,0 +1,16 @@
+/**
+ * WSWUBlastService.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis WSDL2Java emitter.
+ */
+
+package uk.ac.ebi.www;
+
+public interface WSWUBlastService extends javax.xml.rpc.Service {
+    public java.lang.String getWSWUBlastAddress();
+
+    public uk.ac.ebi.www.WSWUBlast getWSWUBlast() throws javax.xml.rpc.ServiceException;
+
+    public uk.ac.ebi.www.WSWUBlast getWSWUBlast(java.net.URL portAddress) throws javax.xml.rpc.ServiceException;
+}
diff --git a/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java b/src/uk/ac/ebi/www/WSWUBlastServiceLocator.java
new file mode 100755 (executable)
index 0000000..2e8067c
--- /dev/null
@@ -0,0 +1,96 @@
+/**
+ * WSWUBlastServiceLocator.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis WSDL2Java emitter.
+ */
+
+package uk.ac.ebi.www;
+
+public class WSWUBlastServiceLocator extends org.apache.axis.client.Service implements uk.ac.ebi.www.WSWUBlastService {
+
+    // Use to get a proxy class for WSWUBlast
+    private final java.lang.String WSWUBlast_address = "http://www.ebi.ac.uk/~alabarga/cgi-bin/webservices/WSWUBlast";
+
+    public java.lang.String getWSWUBlastAddress() {
+        return WSWUBlast_address;
+    }
+
+    // The WSDD service name defaults to the port name.
+    private java.lang.String WSWUBlastWSDDServiceName = "WSWUBlast";
+
+    public java.lang.String getWSWUBlastWSDDServiceName() {
+        return WSWUBlastWSDDServiceName;
+    }
+
+    public void setWSWUBlastWSDDServiceName(java.lang.String name) {
+        WSWUBlastWSDDServiceName = name;
+    }
+
+    public uk.ac.ebi.www.WSWUBlast getWSWUBlast() throws javax.xml.rpc.ServiceException {
+       java.net.URL endpoint;
+        try {
+            endpoint = new java.net.URL(WSWUBlast_address);
+        }
+        catch (java.net.MalformedURLException e) {
+            return null; // unlikely as URL was validated in WSDL2Java
+        }
+        return getWSWUBlast(endpoint);
+    }
+
+    public uk.ac.ebi.www.WSWUBlast getWSWUBlast(java.net.URL portAddress) throws javax.xml.rpc.ServiceException {
+        try {
+            uk.ac.ebi.www.WSWUBlastSoapBindingStub _stub = new uk.ac.ebi.www.WSWUBlastSoapBindingStub(portAddress, this);
+            _stub.setPortName(getWSWUBlastWSDDServiceName());
+            return _stub;
+        }
+        catch (org.apache.axis.AxisFault e) {
+            return null;
+        }
+    }
+
+    /**
+     * For the given interface, get the stub implementation.
+     * If this service has no port for the given interface,
+     * then ServiceException is thrown.
+     */
+    public java.rmi.Remote getPort(Class serviceEndpointInterface) throws javax.xml.rpc.ServiceException {
+        try {
+            if (uk.ac.ebi.www.WSWUBlast.class.isAssignableFrom(serviceEndpointInterface)) {
+                uk.ac.ebi.www.WSWUBlastSoapBindingStub _stub = new uk.ac.ebi.www.WSWUBlastSoapBindingStub(new java.net.URL(WSWUBlast_address), this);
+                _stub.setPortName(getWSWUBlastWSDDServiceName());
+                return _stub;
+            }
+        }
+        catch (java.lang.Throwable t) {
+            throw new javax.xml.rpc.ServiceException(t);
+        }
+        throw new javax.xml.rpc.ServiceException("There is no stub implementation for the interface:  " + (serviceEndpointInterface == null ? "null" : serviceEndpointInterface.getName()));
+    }
+
+    /**
+     * For the given interface, get the stub implementation.
+     * If this service has no port for the given interface,
+     * then ServiceException is thrown.
+     */
+    public java.rmi.Remote getPort(javax.xml.namespace.QName portName, Class serviceEndpointInterface) throws javax.xml.rpc.ServiceException {
+        java.rmi.Remote _stub = getPort(serviceEndpointInterface);
+        ((org.apache.axis.client.Stub) _stub).setPortName(portName);
+        return _stub;
+    }
+
+    public javax.xml.namespace.QName getServiceName() {
+        return new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "WSWUBlastService");
+    }
+
+    private java.util.HashSet ports = null;
+
+    public java.util.Iterator getPorts() {
+        if (ports == null) {
+            ports = new java.util.HashSet();
+            ports.add(new javax.xml.namespace.QName("WSWUBlast"));
+        }
+        return ports.iterator();
+    }
+
+}
diff --git a/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java b/src/uk/ac/ebi/www/WSWUBlastSoapBindingStub.java
new file mode 100755 (executable)
index 0000000..ea3ee73
--- /dev/null
@@ -0,0 +1,323 @@
+/**
+ * WSWUBlastSoapBindingStub.java
+ *
+ * This file was auto-generated from WSDL
+ * by the Apache Axis WSDL2Java emitter.
+ */
+
+package uk.ac.ebi.www;
+
+public class WSWUBlastSoapBindingStub extends org.apache.axis.client.Stub implements uk.ac.ebi.www.WSWUBlast {
+    private java.util.Vector cachedSerClasses = new java.util.Vector();
+    private java.util.Vector cachedSerQNames = new java.util.Vector();
+    private java.util.Vector cachedSerFactories = new java.util.Vector();
+    private java.util.Vector cachedDeserFactories = new java.util.Vector();
+
+    public WSWUBlastSoapBindingStub() throws org.apache.axis.AxisFault {
+         this(null);
+    }
+
+    public WSWUBlastSoapBindingStub(java.net.URL endpointURL, javax.xml.rpc.Service service) throws org.apache.axis.AxisFault {
+         this(service);
+         super.cachedEndpoint = endpointURL;
+    }
+
+    public WSWUBlastSoapBindingStub(javax.xml.rpc.Service service) throws org.apache.axis.AxisFault {
+        if (service == null) {
+            super.service = new org.apache.axis.client.Service();
+        } else {
+            super.service = service;
+        }
+            java.lang.Class cls;
+            javax.xml.namespace.QName qName;
+            java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
+            java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
+            java.lang.Class enumsf = org.apache.axis.encoding.ser.EnumSerializerFactory.class;
+            java.lang.Class enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
+            java.lang.Class arraysf = org.apache.axis.encoding.ser.ArraySerializerFactory.class;
+            java.lang.Class arraydf = org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
+            java.lang.Class simplesf = org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
+            java.lang.Class simpledf = org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
+            qName = new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "inputParams");
+            cachedSerQNames.add(qName);
+            cls = uk.ac.ebi.www.InputParams.class;
+            cachedSerClasses.add(cls);
+            cachedSerFactories.add(beansf);
+            cachedDeserFactories.add(beandf);
+
+            qName = new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "WSArrayofFile");
+            cachedSerQNames.add(qName);
+            cls = uk.ac.ebi.www.WSFile[].class;
+            cachedSerClasses.add(cls);
+            cachedSerFactories.add(arraysf);
+            cachedDeserFactories.add(arraydf);
+
+            qName = new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "WSArrayofData");
+            cachedSerQNames.add(qName);
+            cls = uk.ac.ebi.www.Data[].class;
+            cachedSerClasses.add(cls);
+            cachedSerFactories.add(arraysf);
+            cachedDeserFactories.add(arraydf);
+
+            qName = new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "data");
+            cachedSerQNames.add(qName);
+            cls = uk.ac.ebi.www.Data.class;
+            cachedSerClasses.add(cls);
+            cachedSerFactories.add(beansf);
+            cachedDeserFactories.add(beandf);
+
+            qName = new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "WSFile");
+            cachedSerQNames.add(qName);
+            cls = uk.ac.ebi.www.WSFile.class;
+            cachedSerClasses.add(cls);
+            cachedSerFactories.add(beansf);
+            cachedDeserFactories.add(beandf);
+
+    }
+
+    private org.apache.axis.client.Call createCall() throws java.rmi.RemoteException {
+        try {
+            org.apache.axis.client.Call _call =
+                    (org.apache.axis.client.Call) super.service.createCall();
+            if (super.maintainSessionSet) {
+                _call.setMaintainSession(super.maintainSession);
+            }
+            if (super.cachedUsername != null) {
+                _call.setUsername(super.cachedUsername);
+            }
+            if (super.cachedPassword != null) {
+                _call.setPassword(super.cachedPassword);
+            }
+            if (super.cachedEndpoint != null) {
+                _call.setTargetEndpointAddress(super.cachedEndpoint);
+            }
+            if (super.cachedTimeout != null) {
+                _call.setTimeout(super.cachedTimeout);
+            }
+            if (super.cachedPortName != null) {
+                _call.setPortName(super.cachedPortName);
+            }
+            java.util.Enumeration keys = super.cachedProperties.keys();
+            while (keys.hasMoreElements()) {
+                java.lang.String key = (java.lang.String) keys.nextElement();
+                if(_call.isPropertySupported(key))
+                    _call.setProperty(key, super.cachedProperties.get(key));
+              //  else
+                 //   _call.setScopedProperty(key, super.cachedProperties.get(key));
+            }
+            // All the type mapping information is registered
+            // when the first call is made.
+            // The type mapping information is actually registered in
+            // the TypeMappingRegistry of the service, which
+            // is the reason why registration is only needed for the first call.
+            synchronized (this) {
+                if (firstCall()) {
+                    // must set encoding style before registering serializers
+                    _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
+                    for (int i = 0; i < cachedSerFactories.size(); ++i) {
+                        java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
+                        javax.xml.namespace.QName qName =
+                                (javax.xml.namespace.QName) cachedSerQNames.get(i);
+                        java.lang.Class sf = (java.lang.Class)
+                                 cachedSerFactories.get(i);
+                        java.lang.Class df = (java.lang.Class)
+                                 cachedDeserFactories.get(i);
+                        _call.registerTypeMapping(cls, qName, sf, df, false);
+                    }
+                }
+            }
+            return _call;
+        }
+        catch (java.lang.Throwable t) {
+            throw new org.apache.axis.AxisFault("Failure trying to get the Call object", t);
+        }
+    }
+
+    public byte[] poll(java.lang.String jobid, java.lang.String type) throws java.rmi.RemoteException {
+        if (super.cachedEndpoint == null) {
+            throw new org.apache.axis.NoEndPointException();
+        }
+        org.apache.axis.client.Call _call = createCall();
+        _call.addParameter(new javax.xml.namespace.QName("", "jobid"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, javax.xml.rpc.ParameterMode.IN);
+        _call.addParameter(new javax.xml.namespace.QName("", "type"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, javax.xml.rpc.ParameterMode.IN);
+        _call.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "base64Binary"), byte[].class);
+        _call.setUseSOAPAction(true);
+        _call.setSOAPActionURI("http://www.ebi.ac.uk/WSWUBlast#poll");
+        _call.setOperationStyle("rpc");
+        _call.setOperationName(new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "poll"));
+
+        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {jobid, type});
+
+        if (_resp instanceof java.rmi.RemoteException) {
+            throw (java.rmi.RemoteException)_resp;
+        }
+        else {
+            try {
+                return (byte[]) _resp;
+            } catch (java.lang.Exception _exception) {
+                return (byte[]) org.apache.axis.utils.JavaUtils.convert(_resp, byte[].class);
+            }
+        }
+    }
+
+    public java.lang.String runWUBlast(uk.ac.ebi.www.InputParams params, uk.ac.ebi.www.Data[] content) throws java.rmi.RemoteException {
+        if (super.cachedEndpoint == null) {
+            throw new org.apache.axis.NoEndPointException();
+        }
+        org.apache.axis.client.Call _call = createCall();
+        _call.addParameter(new javax.xml.namespace.QName("", "params"), new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "inputParams"), uk.ac.ebi.www.InputParams.class, javax.xml.rpc.ParameterMode.IN);
+        _call.addParameter(new javax.xml.namespace.QName("", "content"), new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "WSArrayofData"), uk.ac.ebi.www.Data[].class, javax.xml.rpc.ParameterMode.IN);
+        _call.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class);
+        _call.setUseSOAPAction(true);
+        _call.setSOAPActionURI("http://www.ebi.ac.uk/WSWUBlast#runWUBlast");
+        _call.setOperationStyle("rpc");
+        _call.setOperationName(new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "runWUBlast"));
+
+        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {params, content});
+
+        if (_resp instanceof java.rmi.RemoteException) {
+            throw (java.rmi.RemoteException)_resp;
+        }
+        else {
+            try {
+                return (java.lang.String) _resp;
+            } catch (java.lang.Exception _exception) {
+                return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp, java.lang.String.class);
+            }
+        }
+    }
+
+    public byte[] test(java.lang.String jobid, java.lang.String type) throws java.rmi.RemoteException {
+        if (super.cachedEndpoint == null) {
+            throw new org.apache.axis.NoEndPointException();
+        }
+        org.apache.axis.client.Call _call = createCall();
+        _call.addParameter(new javax.xml.namespace.QName("", "jobid"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, javax.xml.rpc.ParameterMode.IN);
+        _call.addParameter(new javax.xml.namespace.QName("", "type"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, javax.xml.rpc.ParameterMode.IN);
+        _call.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "base64Binary"), byte[].class);
+        _call.setUseSOAPAction(true);
+        _call.setSOAPActionURI("http://www.ebi.ac.uk/WSWUBlast#test");
+        _call.setOperationStyle("rpc");
+        _call.setOperationName(new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "test"));
+
+        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {jobid, type});
+
+        if (_resp instanceof java.rmi.RemoteException) {
+            throw (java.rmi.RemoteException)_resp;
+        }
+        else {
+            try {
+                return (byte[]) _resp;
+            } catch (java.lang.Exception _exception) {
+                return (byte[]) org.apache.axis.utils.JavaUtils.convert(_resp, byte[].class);
+            }
+        }
+    }
+
+    public java.lang.String checkStatus(java.lang.String jobid) throws java.rmi.RemoteException {
+        if (super.cachedEndpoint == null) {
+            throw new org.apache.axis.NoEndPointException();
+        }
+        org.apache.axis.client.Call _call = createCall();
+        _call.addParameter(new javax.xml.namespace.QName("", "jobid"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, javax.xml.rpc.ParameterMode.IN);
+        _call.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class);
+        _call.setUseSOAPAction(true);
+        _call.setSOAPActionURI("http://www.ebi.ac.uk/WSWUBlast#checkStatus");
+        _call.setOperationStyle("rpc");
+        _call.setOperationName(new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "checkStatus"));
+
+        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {jobid});
+
+        if (_resp instanceof java.rmi.RemoteException) {
+            throw (java.rmi.RemoteException)_resp;
+        }
+        else {
+            try {
+                return (java.lang.String) _resp;
+            } catch (java.lang.Exception _exception) {
+                return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(_resp, java.lang.String.class);
+            }
+        }
+    }
+
+    public uk.ac.ebi.www.WSFile[] getResults(java.lang.String jobid) throws java.rmi.RemoteException {
+        if (super.cachedEndpoint == null) {
+            throw new org.apache.axis.NoEndPointException();
+        }
+        org.apache.axis.client.Call _call = createCall();
+        _call.addParameter(new javax.xml.namespace.QName("", "jobid"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, javax.xml.rpc.ParameterMode.IN);
+        _call.setReturnType(new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "WSArrayofFile"), uk.ac.ebi.www.WSFile[].class);
+        _call.setUseSOAPAction(true);
+        _call.setSOAPActionURI("http://www.ebi.ac.uk/WSWUBlast#getResults");
+        _call.setOperationStyle("rpc");
+        _call.setOperationName(new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "getResults"));
+
+        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {jobid});
+
+        if (_resp instanceof java.rmi.RemoteException) {
+            throw (java.rmi.RemoteException)_resp;
+        }
+        else {
+            try {
+                return (uk.ac.ebi.www.WSFile[]) _resp;
+            } catch (java.lang.Exception _exception) {
+                return (uk.ac.ebi.www.WSFile[]) org.apache.axis.utils.JavaUtils.convert(_resp, uk.ac.ebi.www.WSFile[].class);
+            }
+        }
+    }
+
+    public byte[] polljob(java.lang.String jobid, java.lang.String outformat) throws java.rmi.RemoteException {
+        if (super.cachedEndpoint == null) {
+            throw new org.apache.axis.NoEndPointException();
+        }
+        org.apache.axis.client.Call _call = createCall();
+        _call.addParameter(new javax.xml.namespace.QName("", "jobid"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, javax.xml.rpc.ParameterMode.IN);
+        _call.addParameter(new javax.xml.namespace.QName("", "outformat"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "string"), java.lang.String.class, javax.xml.rpc.ParameterMode.IN);
+        _call.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "base64Binary"), byte[].class);
+        _call.setUseSOAPAction(true);
+        _call.setSOAPActionURI("http://www.ebi.ac.uk/WSWUBlast#polljob");
+        _call.setOperationStyle("rpc");
+        _call.setOperationName(new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "polljob"));
+
+        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {jobid, outformat});
+
+        if (_resp instanceof java.rmi.RemoteException) {
+            throw (java.rmi.RemoteException)_resp;
+        }
+        else {
+            try {
+                return (byte[]) _resp;
+            } catch (java.lang.Exception _exception) {
+                return (byte[]) org.apache.axis.utils.JavaUtils.convert(_resp, byte[].class);
+            }
+        }
+    }
+
+    public byte[] doWUBlast(uk.ac.ebi.www.InputParams params, byte[] content) throws java.rmi.RemoteException {
+        if (super.cachedEndpoint == null) {
+            throw new org.apache.axis.NoEndPointException();
+        }
+        org.apache.axis.client.Call _call = createCall();
+        _call.addParameter(new javax.xml.namespace.QName("", "params"), new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "inputParams"), uk.ac.ebi.www.InputParams.class, javax.xml.rpc.ParameterMode.IN);
+        _call.addParameter(new javax.xml.namespace.QName("", "content"), new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "base64Binary"), byte[].class, javax.xml.rpc.ParameterMode.IN);
+        _call.setReturnType(new javax.xml.namespace.QName("http://www.w3.org/2001/XMLSchema", "base64Binary"), byte[].class);
+        _call.setUseSOAPAction(true);
+        _call.setSOAPActionURI("http://www.ebi.ac.uk/WSWUBlast#doWUBlast");
+        _call.setOperationStyle("rpc");
+        _call.setOperationName(new javax.xml.namespace.QName("http://www.ebi.ac.uk/WSWUBlast", "doWUBlast"));
+
+        java.lang.Object _resp = _call.invoke(new java.lang.Object[] {params, content});
+
+        if (_resp instanceof java.rmi.RemoteException) {
+            throw (java.rmi.RemoteException)_resp;
+        }
+        else {
+            try {
+                return (byte[]) _resp;
+            } catch (java.lang.Exception _exception) {
+                return (byte[]) org.apache.axis.utils.JavaUtils.convert(_resp, byte[].class);
+            }
+        }
+    }
+
+}