-ScoreMatrix BLOSUM80
-ARNDCQEGHILKMFPSTWYVBJZX*
#
-# Source: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/C_DOC/lxr/source/data/BLOSUM80
+# Source: http://www.genome.jp/dbget-bin/www_bget?aaindex:HENS920103
#
-# ** THIS IS A SUGGESTED FILE, NOT VALIDATED **
-# Please read https://www.biostars.org/p/190004/ for possible alternatives!
-#
-# The first line declares a ScoreMatrix with the name BLOSUM80
-# The second line gives the symbols for which scores are held in the matrix
-# These may include a space (but not as the first or last character)
-#
-# Scores are not symbol case sensitive, unless column(s) are provided for lower case characters
-# The 'guide symbol' at the start of each row of score values is optional
-#
-# Comment header line with symbols is provided as a guide
-# Values may be integer or floating point, delimited by tab, space, comma or combinations
-#
-# A R N D C Q E G H I L K M F P S T W Y V B J Z X *
-A 5 -2 -2 -2 -1 -1 -1 0 -2 -2 -2 -1 -1 -3 -1 1 0 -3 -2 0 -2 -2 -1 -1 -6
-R -2 6 -1 -2 -4 1 -1 -3 0 -3 -3 2 -2 -4 -2 -1 -1 -4 -3 -3 -1 -3 0 -1 -6
-N -2 -1 6 1 -3 0 -1 -1 0 -4 -4 0 -3 -4 -3 0 0 -4 -3 -4 5 -4 0 -1 -6
-D -2 -2 1 6 -4 -1 1 -2 -2 -4 -5 -1 -4 -4 -2 -1 -1 -6 -4 -4 5 -5 1 -1 -6
-C -1 -4 -3 -4 9 -4 -5 -4 -4 -2 -2 -4 -2 -3 -4 -2 -1 -3 -3 -1 -4 -2 -4 -1 -6
-Q -1 1 0 -1 -4 6 2 -2 1 -3 -3 1 0 -4 -2 0 -1 -3 -2 -3 0 -3 4 -1 -6
-E -1 -1 -1 1 -5 2 6 -3 0 -4 -4 1 -2 -4 -2 0 -1 -4 -3 -3 1 -4 5 -1 -6
-G 0 -3 -1 -2 -4 -2 -3 6 -3 -5 -4 -2 -4 -4 -3 -1 -2 -4 -4 -4 -1 -5 -3 -1 -6
-H -2 0 0 -2 -4 1 0 -3 8 -4 -3 -1 -2 -2 -3 -1 -2 -3 2 -4 -1 -4 0 -1 -6
-I -2 -3 -4 -4 -2 -3 -4 -5 -4 5 1 -3 1 -1 -4 -3 -1 -3 -2 3 -4 3 -4 -1 -6
-L -2 -3 -4 -5 -2 -3 -4 -4 -3 1 4 -3 2 0 -3 -3 -2 -2 -2 1 -4 3 -3 -1 -6
-K -1 2 0 -1 -4 1 1 -2 -1 -3 -3 5 -2 -4 -1 -1 -1 -4 -3 -3 -1 -3 1 -1 -6
-M -1 -2 -3 -4 -2 0 -2 -4 -2 1 2 -2 6 0 -3 -2 -1 -2 -2 1 -3 2 -1 -1 -6
-F -3 -4 -4 -4 -3 -4 -4 -4 -2 -1 0 -4 0 6 -4 -3 -2 0 3 -1 -4 0 -4 -1 -6
-P -1 -2 -3 -2 -4 -2 -2 -3 -3 -4 -3 -1 -3 -4 8 -1 -2 -5 -4 -3 -2 -4 -2 -1 -6
-S 1 -1 0 -1 -2 0 0 -1 -1 -3 -3 -1 -2 -3 -1 5 1 -4 -2 -2 0 -3 0 -1 -6
-T 0 -1 0 -1 -1 -1 -1 -2 -2 -1 -2 -1 -1 -2 -2 1 5 -4 -2 0 -1 -1 -1 -1 -6
-W -3 -4 -4 -6 -3 -3 -4 -4 -3 -3 -2 -4 -2 0 -5 -4 -4 11 2 -3 -5 -3 -3 -1 -6
-Y -2 -3 -3 -4 -3 -2 -3 -4 2 -2 -2 -3 -2 3 -4 -2 -2 2 7 -2 -3 -2 -3 -1 -6
-V 0 -3 -4 -4 -1 -3 -3 -4 -4 3 1 -3 1 -1 -3 -2 0 -3 -2 4 -4 2 -3 -1 -6
-B -2 -1 5 5 -4 0 1 -1 -1 -4 -4 -1 -3 -4 -2 0 -1 -5 -3 -4 5 -4 0 -1 -6
-J -2 -3 -4 -5 -2 -3 -4 -5 -4 3 3 -3 2 0 -4 -3 -1 -3 -2 2 -4 3 -3 -1 -6
-Z -1 0 0 1 -4 4 5 -3 0 -4 -3 1 -1 -4 -2 0 -1 -3 -3 -3 0 -3 5 -1 -6
-X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -6
-* -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 1
-#
-# A R N D C Q E G H I L K M F P S T W Y V B J Z X *
+H HENS920103
+D BLOSUM80 substitution matrix (Henikoff-Henikoff, 1992)
+R PMID:1438297
+A Henikoff, S. and Henikoff, J.G.
+T Amino acid substitution matrices from protein blocks
+J Proc. Natl. Acad. Sci. USA 89, 10915-10919 (1992)
+* matrix in 1/3 Bit Units
+M rows = ARNDCQEGHILKMFPSTWYV, cols = ARNDCQEGHILKMFPSTWYV
+ 7.
+ -3. 9.
+ -3. -1. 9.
+ -3. -3. 2. 10.
+ -1. -6. -5. -7. 13.
+ -2. 1. 0. -1. -5. 9.
+ -2. -1. -1. 2. -7. 3. 8.
+ 0. -4. -1. -3. -6. -4. -4. 9.
+ -3. 0. 1. -2. -7. 1. 0. -4. 12.
+ -3. -5. -6. -7. -2. -5. -6. -7. -6. 7.
+ -3. -4. -6. -7. -3. -4. -6. -7. -5. 2. 6.
+ -1. 3. 0. -2. -6. 2. 1. -3. -1. -5. -4. 8.
+ -2. -3. -4. -6. -3. -1. -4. -5. -4. 2. 3. -3. 9.
+ -4. -5. -6. -6. -4. -5. -6. -6. -2. -1. 0. -5. 0. 10.
+ -1. -3. -4. -3. -6. -3. -2. -5. -4. -5. -5. -2. -4. -6. 12.
+ 2. -2. 1. -1. -2. -1. -1. -1. -2. -4. -4. -1. -3. -4. -2. 7.
+ 0. -2. 0. -2. -2. -1. -2. -3. -3. -2. -3. -1. -1. -4. -3. 2. 8.
+ -5. -5. -7. -8. -5. -4. -6. -6. -4. -5. -4. -6. -3. 0. -7. -6. -5. 16.
+ -4. -4. -4. -6. -5. -3. -5. -6. 3. -3. -2. -4. -3. 4. -6. -3. -3. 3. 11.
+ -1. -4. -5. -6. -2. -4. -4. -6. -5. 4. 1. -4. 1. -2. -4. -3. 0. -5. -3. 7.
+//
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