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JAL-2602 unit test added
author
gmungoc
<g.m.carstairs@dundee.ac.uk>
Fri, 30 Jun 2017 14:06:50 +0000
(15:06 +0100)
committer
gmungoc
<g.m.carstairs@dundee.ac.uk>
Fri, 30 Jun 2017 14:06:50 +0000
(15:06 +0100)
test/jalview/gui/AlignViewportTest.java
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diff --git
a/test/jalview/gui/AlignViewportTest.java
b/test/jalview/gui/AlignViewportTest.java
index
4660842
..
346d74d
100644
(file)
--- a/
test/jalview/gui/AlignViewportTest.java
+++ b/
test/jalview/gui/AlignViewportTest.java
@@
-450,6
+450,23
@@
public class AlignViewportTest
}
;
Assert.assertEquals(c, 1, "Expected to find one occupancy row.");
}
;
Assert.assertEquals(c, 1, "Expected to find one occupancy row.");
+ }
+ @Test(groups = { "Functional" })
+ public void testGetConsensusSeq()
+ {
+ /*
+ * A-C
+ * A-C
+ * A-D
+ * --D
+ * consensus expected to be A-C
+ */
+ String fasta = ">s1\nA-C\n>s2\nA-C\n>s3\nA-D\n>s4\n--D\n";
+ AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(fasta,
+ DataSourceType.PASTE);
+ AlignViewport testme = af.getViewport();
+ SequenceI cons = testme.getConsensusSeq();
+ assertEquals("A-C", cons.getSequenceAsString());
}
}
}
}