+ public jalview.ws.uimodel.AlignAnalysisUIText getAlignAnalysisUI()
+ {
+ return aaui;
+ }
+
+ public void setAlignAnalysisUI(
+ jalview.ws.uimodel.AlignAnalysisUIText aaui)
+ {
+ this.aaui = aaui;
+ }
+
+ public boolean isInteractiveUpdate()
+ {
+ return aaui != null && aaui.isAA();
+ }
+ // config flags for SeqAnnotationServiceCalcWorker
+
+ public boolean isProteinService()
+ {
+ return aaui == null ? true : aaui.isPr();
+ }
+
+ public boolean isNucleotideService()
+ {
+ return aaui == null ? false : aaui.isNa();
+ }
+
+ public boolean isNeedsAlignedSequences()
+ {
+ return aaui == null ? false : aaui.isNeedsAlignedSeqs();
+ }
+
+ public boolean isAlignmentAnalysis()
+ {
+ return aaui == null ? false : aaui.isAA();
+ }
+
+ public boolean isFilterSymbols()
+ {
+ return aaui != null ? aaui.isFilterSymbols() : true;
+ }
+
+ public int getMinimumInputSequences()
+ {
+ return aaui != null ? aaui.getMinimumSequences() : 1;
+ }
+
+ public String getNameURI()
+ {
+ return "java:" + getName();
+ }
+
+ public String getUri()
+ {
+ // TODO verify that service parameter sets in projects are consistent with
+ // Jalview 2.10.4
+ // this is only valid for Jaba 1.0 - this formula might have to change!
+ return getHostURL()
+ + (getHostURL().lastIndexOf("/") == (getHostURL().length() - 1)
+ ? ""
+ : "/")
+ + getName();
+ }
+