JAL-1613 hotfix for duplicated sequence after pairwise alignment

diff --git a/src/jalview/gui/PairwiseAlignPanel.java b/src/jalview/gui/PairwiseAlignPanel.java
index 69b6ba6..bc2c27c 100755 (executable)
--- a/src/jalview/gui/PairwiseAlignPanel.java
+++ b/src/jalview/gui/PairwiseAlignPanel.java
@@ -100,7 +100,7 @@ public class PairwiseAlignPanel extends GPairwiseAlignPanel
 
         textarea.append(as.getOutput());
         sequences.add(as.getAlignedSeq1());
-        sequences.add(as.getAlignedSeq1());
+        sequences.add(as.getAlignedSeq2());
       }
     }