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JAL-3829 use sequence dependent constructor for structure chooser query engine testing
author
Jim Procter
<j.procter@dundee.ac.uk>
Fri, 3 Sep 2021 17:42:42 +0000
(18:42 +0100)
committer
Jim Procter
<j.procter@dundee.ac.uk>
Fri, 3 Sep 2021 17:42:57 +0000
(18:42 +0100)
test/jalview/gui/StructureChooserTest.java
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diff --git
a/test/jalview/gui/StructureChooserTest.java
b/test/jalview/gui/StructureChooserTest.java
index
c187c60
..
f3c5ed8
100644
(file)
--- a/
test/jalview/gui/StructureChooserTest.java
+++ b/
test/jalview/gui/StructureChooserTest.java
@@
-32,6
+32,7
@@
import jalview.datamodel.SequenceI;
import jalview.fts.api.FTSData;
import jalview.gui.structurechooser.PDBStructureChooserQuerySource;
import jalview.gui.structurechooser.StructureChooserQuerySource;
import jalview.fts.api.FTSData;
import jalview.gui.structurechooser.PDBStructureChooserQuerySource;
import jalview.gui.structurechooser.StructureChooserQuerySource;
+import jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource;
import jalview.jbgui.FilterOption;
import jalview.ws.params.InvalidArgumentException;
import jalview.jbgui.FilterOption;
import jalview.ws.params.InvalidArgumentException;
@@
-90,7
+91,9
@@
public class StructureChooserTest
public void buildQueryTest()
{
System.out.println("seq >>>> " + seq);
public void buildQueryTest()
{
System.out.println("seq >>>> " + seq);
- StructureChooserQuerySource scquery = StructureChooserQuerySource.getPDBfts();
+
+ StructureChooserQuerySource scquery = StructureChooserQuerySource.getQuerySourceFor(new SequenceI[] { seq});
+ assertTrue(scquery instanceof PDBStructureChooserQuerySource);
String query = scquery.buildQuery(seq);
assertEquals("pdb_id:1tim", query);
seq.getAllPDBEntries().clear();
String query = scquery.buildQuery(seq);
assertEquals("pdb_id:1tim", query);
seq.getAllPDBEntries().clear();