MessageManager.getString("label.tabs_detected_archaeopteryx"),
MessageManager.getString("label.problem_reading_tree_file"),
JvOptionPane.WARNING_MESSAGE);
MessageManager.getString("label.tabs_detected_archaeopteryx"),
MessageManager.getString("label.problem_reading_tree_file"),
JvOptionPane.WARNING_MESSAGE);
parentAvport = jalviewAlignmentViewport;
sequencesBoundToNodes = alignMappedToNodes;
nodesBoundToSequences = nodesMappedToAlign;
parentAvport = jalviewAlignmentViewport;
sequencesBoundToNodes = alignMappedToNodes;
nodesBoundToSequences = nodesMappedToAlign;
PaintRefresher.Register(treeView, parentAvport.getSequenceSetId());
associatedPanels = PaintRefresher
.getAssociatedPanels(parentAvport.getSequenceSetId());
PaintRefresher.Register(treeView, parentAvport.getSequenceSetId());
associatedPanels = PaintRefresher
.getAssociatedPanels(parentAvport.getSequenceSetId());
for (SequenceI selectedSequence : seqsel.getSequences())
{
PhylogenyNode matchingNode = sequencesBoundToNodes.get(selectedSequence);
for (SequenceI selectedSequence : seqsel.getSequences())
{
PhylogenyNode matchingNode = sequencesBoundToNodes.get(selectedSequence);
- Color foundNodesColour = treeView.getTreeColorSet()
- .getFoundColor0();
- matchingNode.getBranchData()
- .setBranchColor(new BranchColor(foundNodesColour));
+ // Color foundNodesColour = treeView.getTreeColorSet()
+ // .getFoundColor0();
+ // matchingNode.getBranchData()
+ // .setBranchColor(new BranchColor(foundNodesColour));