JAL-1236 TODO: fix up parser to cope with the currently defined custom header......

diff --git a/src/jalview/io/ClustalFile.java b/src/jalview/io/ClustalFile.java
index 537c154..c558186 100755 (executable)
--- a/src/jalview/io/ClustalFile.java
+++ b/src/jalview/io/ClustalFile.java
@@ -97,7 +97,7 @@ public class ClustalFile extends AlignFile
           if (str.hasMoreTokens())
           {
             id = str.nextToken();
-
+           // TODO: JAL-1236 other tokens may be indicative of a header for Clustal format
             if (id.equalsIgnoreCase("CLUSTAL"))
             {
               flag = true;