source.jalview.org Git - jalview.git/history

git://source.jalview.org / jalview.git / history

2012-11-08	jprocter	remember to close input file!	tree \| commitdiff
2012-11-08	jprocter	tidy imports	tree \| commitdiff
2012-10-22	jprocter	Jalview 2.8 Source Header	tree \| commitdiff
2012-10-03	jprocter	formatting	tree \| commitdiff
2011-10-10	jprocter	update author list in license for (JAL-826)	tree \| commitdiff
2011-09-27	jprocter	apply version 2.7 copyright	tree \| commitdiff
2011-07-21	jprocter	retrieve all sequences matching a particular name ...	tree \| commitdiff
2011-07-07	jprocter	extract sequence from DNA bases like 'DG' (JAL-866)	tree \| commitdiff
2011-05-17	jprocter	refactor to allow distinct StructureSelectionManager...	tree \| commitdiff
2011-02-18	jprocter	call to release any explicit event handler references	tree \| commitdiff
2011-01-18	jprocter	javadoc	tree \| commitdiff
2011-01-18	jprocter	javadoc	tree \| commitdiff
2011-01-06	jprocter	JAL-730	tree \| commitdiff
2011-01-05	jprocter	JAL-727	tree \| commitdiff
2010-11-11	jprocter	improved logic for distinguishing amino acids and nucle...	tree \| commitdiff
2010-09-23	jprocter	apply jalview code style	tree \| commitdiff
2010-09-23	jprocter	Jalview 2.6 source licence	tree \| commitdiff
2010-08-18	jprocter	JAL-612 - catch hidden OOM related to filling in cut...	tree \| commitdiff
2010-08-18	jprocter	cutn'paste fix so rna residue chains are assembled...	tree \| commitdiff
2010-06-29	jprocter	upgrading structure/sequence binding so that a structur...	tree \| commitdiff
2010-06-29	jprocter	typo bugfix	tree \| commitdiff
2010-06-11	jprocter	patch for JAL-556 - more robust mapping of sequence...	tree \| commitdiff
2010-06-11	jprocter	patch for JAL-556	tree \| commitdiff
2010-04-30	jprocter	jalview 2.5 release banner	tree \| commitdiff
2009-10-30	jprocter	na pdb: recognise NA residue names	tree \| commitdiff
2009-10-30	jprocter	na pdb: detect P backbone	tree \| commitdiff
2009-10-12	jprocter	ensure id string doesn't get set to the empty string...	tree \| commitdiff
2009-06-08	jprocter	apply gpl development license	tree \| commitdiff
2009-06-08	jprocter	patch for wierd format header lines and apply gpl devel...	tree \| commitdiff
2008-09-04	jprocter	merge from 2_4_Release branch	tree \| commitdiff
2008-01-29	jprocter	FileParse object can be re-used to read different files...	tree \| commitdiff
2007-11-16	jprocter	refactored ebi soap client and AbstractSequenceFetcher...	tree \| commitdiff
2007-10-27	jprocter	enabled platform dependent embedding of menuBar with...	tree \| commitdiff
2007-07-13	jprocter	refactor	tree \| commitdiff
2007-06-17	jprocter	fix modeller generated PDB file reading bug (missing...	tree \| commitdiff
2007-05-14	amwaterhouse	Invert mouse drag controls	tree \| commitdiff
2007-05-08	amwaterhouse	mirror image recitified	tree \| commitdiff
2007-05-07	amwaterhouse	Dont use gold colouring for highlight	tree \| commitdiff
2007-05-07	amwaterhouse	Use PDB id for grouping mappings	tree \| commitdiff
2007-05-07	amwaterhouse	PDBViewer available if necessary	tree \| commitdiff
2007-05-01	amwaterhouse	set chains available	tree \| commitdiff
2007-04-30	amwaterhouse	setVisible replaces show	tree \| commitdiff
2007-04-27	amwaterhouse	FeatureRenderer mixups fixed	tree \| commitdiff
2007-04-27	amwaterhouse	Remove system.out AppletPDBViewer.java	tree \| commitdiff
2007-04-27	amwaterhouse	Trouble with featureRenderers fixed	tree \| commitdiff
2007-04-25	jprocter	transfer of residue numbering as alignment annotation	tree \| commitdiff
2007-04-23	amwaterhouse	getColour method added	tree \| commitdiff
2007-04-20	jprocter	adds annotation for display (with flag to set alignment...	tree \| commitdiff
2007-04-19	jprocter	tfactor annotation description includes full sequenceID	tree \| commitdiff
2007-04-19	jprocter	tfactor and occupancy extracted from PDB file, and...	tree \| commitdiff
2007-04-18	amwaterhouse	Redundant code commented out	tree \| commitdiff
2007-04-11	amwaterhouse	featureAdded not in applet	tree \| commitdiff
2007-04-02	jprocter	fr==null check.	tree \| commitdiff
2007-03-26	jprocter	PDB residue numberings transfered and alignment view...	tree \| commitdiff
2007-03-22	amwaterhouse	Commented out userDefColours for compilation. Class...	tree \| commitdiff
2007-02-27	amwaterhouse	No longer use ref to seqcanvas for painting	tree \| commitdiff
2007-02-27	amwaterhouse	blank space for chain name if empty	tree \| commitdiff
2007-02-27	amwaterhouse	keep record of atomIndeX	tree \| commitdiff
2007-02-12	amwaterhouse	>0 rather than -1 check	tree \| commitdiff
2007-02-12	jprocter	tranfer pdbresno features to dataset sequence.	tree \| commitdiff
2007-02-07	amwaterhouse	formatting	tree \| commitdiff
2007-02-01	amwaterhouse	find colours uncommented	tree \| commitdiff
2007-02-01	amwaterhouse	sequence.getStart() in findTrueIndex	tree \| commitdiff
2007-01-23	jprocter	transfer resnum features now returns features (could...	tree \| commitdiff
2007-01-19	jprocter	PDBChain maintains reference to dataset of sequences...	tree \| commitdiff
2007-01-18	jprocter	transfer and update of sequenceFeatures for associated...	tree \| commitdiff
2007-01-18	jprocter	transfer and update of sequenceFeatures for associated...	tree \| commitdiff
2007-01-18	jprocter	fixed last-residue bug and added sequence feature creat...	tree \| commitdiff
2007-01-18	jprocter	added resNum+insCode string field for truly unambiguous...	tree \| commitdiff
2007-01-17	jprocter	made atom attributes public (rather than put in get...	tree \| commitdiff
2006-12-21	amwaterhouse	getSequenceAsString	tree \| commitdiff
2006-12-05	amwaterhouse	sequence is char []	tree \| commitdiff
2006-11-20	amwaterhouse	Memory check on PDB file	tree \| commitdiff
2006-08-21	amwaterhouse	header updated	tree \| commitdiff
2006-08-11	amwaterhouse	Printstacktrace	tree \| commitdiff
2006-08-11	amwaterhouse	inFile might be null if PDB was pasted	tree \| commitdiff
2006-07-27	amwaterhouse	NOR the <pre> tabs	tree \| commitdiff
2006-07-27	amwaterhouse	Save PDB file to disk	tree \| commitdiff
2006-07-26	amwaterhouse	PDB file MUST have an id	tree \| commitdiff
2006-07-26	jprocter	Ignore list created	tree \| commitdiff
2006-07-25	amwaterhouse	Extends AlignFile, dataset has PDBEntry added	tree \| commitdiff
2006-07-25	amwaterhouse	Can load PDB file from disk	tree \| commitdiff
2006-07-07	amwaterhouse	Changeable background colour	tree \| commitdiff
2006-07-07	amwaterhouse	Make sure bond has a colour	tree \| commitdiff
2006-07-07	amwaterhouse	Make sure atom has a colour	tree \| commitdiff
2006-06-23	amwaterhouse	++ --	tree \| commitdiff
2006-03-24	amwaterhouse	Has its own featureRenderer	tree \| commitdiff
2006-03-24	amwaterhouse	ZSort no longer static	tree \| commitdiff
2006-03-24	amwaterhouse	Has own featurerenderer	tree \| commitdiff
2006-03-08	amwaterhouse	Can read from zip file	tree \| commitdiff
2006-03-01	jprocter	propagate SearchResult object use to MCView's highlight...	tree \| commitdiff
2005-12-22	amwaterhouse	Jar file 20% smaller	tree \| commitdiff
2005-12-09	jprocter	fixed pdbentry creation and multiple uniprot or pdb...	tree \| commitdiff
2005-12-09	amwaterhouse	Applet Structure viewer has all colours available	tree \| commitdiff
2005-12-09	amwaterhouse	All colours added to Structure viewer	tree \| commitdiff
2005-12-08	amwaterhouse	SeqColoursReady	tree \| commitdiff
2005-12-08	amwaterhouse	SeqColoursReady boolean added	tree \| commitdiff
2005-12-08	amwaterhouse	EqualsignoreCase	tree \| commitdiff
2005-12-07	amwaterhouse	License added to new files	tree \| commitdiff
2005-12-06	amwaterhouse	PDB structure viewer updated	tree \| commitdiff
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