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git://source.jalview.org / jalview.git / history

[jalview.git] / src / jalview / bin / Jalview.java

2022-12-13	Jim Procter	Merge branch 'alpha/origin_2022_JAL-3066_Jalview_212_sl...	blob \| commitdiff
2022-11-21	Jim Procter	Merge commit 'alpha/update_2_12_for_2_11_2_series_merge...	blob \| commitdiff \| diff to current
2021-09-21	Ben Soares	JAL-3691 automatic insertion of Locale.ROOT to toUpperC...	blob \| commitdiff \| diff to current
2021-09-15	Jim Procter	JAL-3741 http to https (and jar to jvp for exampleFile...	blob \| commitdiff \| diff to current
2021-07-25	Jim Procter	JAL-3848 add compbio and jalview to direct connection...	blob \| commitdiff \| diff to current
2020-12-14	Jim Procter	Merge branch 'Jalview-JS/develop' into merge_js_develop	blob \| commitdiff \| diff to current
2020-12-11	Mateusz	JAL-3690 Let's enable web services (seriously this...	blob \| commitdiff \| diff to current
2020-12-08	Ben Soares	Merge branch 'merge/develop_and_rebase_squashed_merge_J...	blob \| commitdiff \| diff to current
2020-12-07	Ben Soares	JAL-3594 added BG logo. Changed some named Jalviews...	blob \| commitdiff \| diff to current
2020-12-01	Ben Soares	JAL-3660 Fix for specified output format when using...	blob \| commitdiff \| diff to current
2020-12-01	Ben Soares	JAL-3530 Added a -nowebservicediscovery command line...	blob \| commitdiff \| diff to current
2020-11-27	Ben Soares	JAL-3660 Fix for specified output format when using...	blob \| commitdiff \| diff to current
2020-11-13	Jim Procter	JAL-3757 JAL-3689 use AppletFormat.checkProtocol to...	blob \| commitdiff \| diff to current
2020-11-13	Ben Soares	JAL-3757 JAL-3689 Fixed checks for URLs by adding check...	blob \| commitdiff \| diff to current
2020-11-13	Ben Soares	JAL-3633 Set proxy preferences before web calls in...	blob \| commitdiff \| diff to current
2020-11-12	Ben Soares	JAL-3633 ensure check both or https:// for urls	blob \| commitdiff \| diff to current
2020-11-05	Ben Soares	JAL-3608 cherry pick of 92cb745e7	blob \| commitdiff \| diff to current
2020-10-26	Mateusz Waronwy	JAL-3690 - introduce shutdown method that cleans up...	blob \| commitdiff \| diff to current
2020-09-14	Ben Soares	JAL-3609 HiDPI scale setting done via system prop in...	blob \| commitdiff \| diff to current
2020-08-12	Jim Procter	Merge branch 'task/JAL-3608_property_set_laf_and_tests...	blob \| commitdiff \| diff to current
2020-08-04	Ben Soares	JAL-3477 Added -help text for jvmmempc and jvmmemmax...	blob \| commitdiff \| diff to current
2020-07-07	Ben Soares	JAL-3608 Changes from code review CR-JAL-236	blob \| commitdiff \| diff to current
2020-06-18	BobHanson	JAL-3659 unnecessary duplication -- test is made in...	blob \| commitdiff \| diff to current
2020-06-18	BobHanson	JAL-3446 unintentially left training message in code.	blob \| commitdiff \| diff to current
2020-06-17	Jim Procter	JAL-3662 JAL-3660 JAL-3561 source formatting	blob \| commitdiff \| diff to current
2020-06-17	Jim Procter	JAL-3660 JAL-3561 output alignment as requested file... cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat	blob \| commitdiff \| diff to current
2020-06-16	BobHanson	JAL-3659 proper headless check; skips setProperty for JS	blob \| commitdiff \| diff to current
2020-06-16	BobHanson	JAL-3662 simple fix for CLI not using right format...	blob \| commitdiff \| diff to current
2020-06-09	BobHanson	JAL-3446 from applet; JAL-3374	blob \| commitdiff \| diff to current
2020-06-07	BobHanson	JAL-3446 reorganized JalviewJSApp (accidentally put...	blob \| commitdiff \| diff to current
2020-06-07	BobHanson	reorganized JalviewJSApp (accidentally put that in...	blob \| commitdiff \| diff to current
2020-06-07	BobHanson	JAL-3446 JavaScript interface	blob \| commitdiff \| diff to current
2020-06-05	BobHanson	JAL-3446 removes all JalviewJSApp dependency from jalvi...	blob \| commitdiff \| diff to current
2020-06-05	BobHanson	Refactoring of Jalview, JalviewAppLoader, JalviewApp...	blob \| commitdiff \| diff to current
2020-06-03	BobHanson	JAL-3446 from JAL-3253 ApplicationSingletonProvider	blob \| commitdiff \| diff to current
2020-06-03	BobHanson	JAL-3446 from JAL-3253 ApplicationSingletonProvider...	blob \| commitdiff \| diff to current
2020-06-02	BobHanson	JAL-3446 from JAL-3253 ApplicationSingletonProvider...	blob \| commitdiff \| diff to current
2020-06-02	BobHanson	JAL-3446 from JAL-3253-applet Desktop and Jws2Discovere...	blob \| commitdiff \| diff to current
2020-06-02	BobHanson	JAL-3626 from JAL-3253-applet Jalview.java	blob \| commitdiff \| diff to current
2020-06-02	BobHanson	JAL-3626 from JAL-3253-applet web page embedding	blob \| commitdiff \| diff to current
2020-05-18	Jim Procter	Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...	blob \| commitdiff \| diff to current
2020-05-04	Ben Soares	JAL-3608 streamlined LaF methods and allow specificying...	blob \| commitdiff \| diff to current
2020-05-03	Ben Soares	JAL-3608 also look at user pref PREFERRED_LAF	blob \| commitdiff \| diff to current
2020-05-01	Ben Soares	JAL-3608 Added java builtin NimbusLookAndFeel option...	blob \| commitdiff \| diff to current
2020-04-30	Ben Soares	JAL-3608 Enforcing MetalLookAndFeel as default on linux...	blob \| commitdiff \| diff to current
2020-04-30	Ben Soares	JAL-3608 Added 'metal' option for laf property	blob \| commitdiff \| diff to current
2020-04-23	Jim Procter	Merge branch 'develop' into alpha/JAL-3362_Jalview_212_...	blob \| commitdiff \| diff to current
2020-04-23	soares	JAL-3608 JAL-3416 Added a 'gtk' option. Not currently...	blob \| commitdiff \| diff to current
2020-04-22	soares	JAL-3608 saved in Eclipse with auto formatting	blob \| commitdiff \| diff to current
2020-04-22	Ben Soares	JAL-3608 Added CrossPlatform LaF and made configurable...	blob \| commitdiff \| diff to current
2020-03-30	gmungoc	Merge branch 'develop' into Jalview-JS/develop	blob \| commitdiff \| diff to current
2020-02-27	Ben Soares	JAL-3543 remove debugging output improvement/JAL-3543_dont_report_null_versions_in_java_console	blob \| commitdiff \| diff to current
2020-02-27	Ben Soares	JAL-3543 Conditional reporting of Install4j and Getdown...	blob \| commitdiff \| diff to current
2019-11-22	Ben Soares	JAL-3449 install4j version, install4j template version...	blob \| commitdiff \| diff to current
2019-11-12	gmungoc	JAL-3274 resource path correction, code tidying (consta...	blob \| commitdiff \| diff to current
2019-11-05	gmungoc	JAL-3210 JAL-3130 skip Taskbar in JalviewJS	blob \| commitdiff \| diff to current
2019-11-05	gmungoc	JAL-3210 JAL-3330 use SequenceOntologyLite in JalviewJS	blob \| commitdiff \| diff to current
2019-07-16	gmungoc	JAL-3210 Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-07-10	Jim Procter	Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...	blob \| commitdiff \| diff to current
2019-07-02	Jim Procter	Merge branch 'develop' into tasks/JAL-3311_removeVamsasMenu	blob \| commitdiff \| diff to current
2019-06-26	Jim Procter	JAL-3334 fix - always load full SO to resolve the seque...	blob \| commitdiff \| diff to current
2019-06-26	Jim Procter	JAL-3111 get rid of nasty tab characters	blob \| commitdiff \| diff to current
2019-06-19	Ben Soares	JAL-3321 Last pieces of the getdown-launcher.jar upgrad...	blob \| commitdiff \| diff to current
2019-06-17	Jim Procter	JAL-3311 remove menus and documentation relating to... tasks/JAL-3311_removeVamsasMenu	blob \| commitdiff \| diff to current
2019-06-14	Jim Procter	JAL-3111 report build type and commit in stdout from...	blob \| commitdiff \| diff to current
2019-06-04	Jim Procter	Merge branch 'develop' into developtomchmmer	blob \| commitdiff \| diff to current
2019-05-21	Ben Soares	JAL-3247 Launcher start improvements. RPM and DEB no...	blob \| commitdiff \| diff to current
2019-04-25	Ben Soares	JAL-3224 JAL-3225 Some fixes in install4j template...	blob \| commitdiff \| diff to current
2019-04-25	Ben Soares	JAL-3224 JAL-3225 Added lines to check for updates...	blob \| commitdiff \| diff to current
2019-04-24	Jim Procter	Merge branch 'task/JAL-3225_Integration_Gradle_building...	blob \| commitdiff \| diff to current
2019-04-15	Ben Soares	JAL-3130 Helper classes to take Class Exceptions when...	blob \| commitdiff \| diff to current
2019-04-05	hansonr	fixes for Jalview command-line URI code	blob \| commitdiff \| diff to current
2019-04-03	hansonr	replacing @j2sNative with @j2sIgnore where appropriate...	blob \| commitdiff \| diff to current
2019-04-03	hansonr	j2sNative clean-up. Fixes problem with second try of...	blob \| commitdiff \| diff to current
2019-04-01	Ben Soares	JAL-3130 JAL-3007 Added gradle build for Java 11 and...	blob \| commitdiff \| diff to current
2019-03-27	gmungoc	JAL-3032 small formatting and isJS() tidy	blob \| commitdiff \| diff to current
2019-03-27	hansonr	isJS cleanup	blob \| commitdiff \| diff to current
2019-03-13	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-03-11	gmungoc	Merge branch 'feature/JAL-3127_seqidChainshading' into...	blob \| commitdiff \| diff to current
2019-03-06	gmungoc	JAL-3035 more das bits removed	blob \| commitdiff \| diff to current
2019-03-06	Jim Procter	JAL-3208 re-enable the setprop CLI arg, but only in...	blob \| commitdiff \| diff to current
2019-02-28	gmungoc	JAL-3032 any url parameter not "j2s..." taken as Jalvie... Jalview-BH/JAL-3026-JAL-3063-JAXB	blob \| commitdiff \| diff to current
2019-02-25	gmungoc	JAL-3032 Jalview (as JS) parse query params to main...	blob \| commitdiff \| diff to current
2019-01-26	hansonr	Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...	blob \| commitdiff \| diff to current
2019-01-21	hansonr	isAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA...	blob \| commitdiff \| diff to current
2019-01-18	hansonr	canvas line/font/pixel fixes; menu accelerators;	blob \| commitdiff \| diff to current
2019-01-11	hansonr	(commented out but potentially useful) methods to tap...	blob \| commitdiff \| diff to current
2018-10-17	Jim Procter	Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...	blob \| commitdiff \| diff to current
2018-10-09	Jim Procter	JAL-3127 pass reference to AlignViewportI when creating...	blob \| commitdiff \| diff to current
2018-09-18	Jim Procter	JAL-3035 more dedasification	blob \| commitdiff \| diff to current
2018-09-11	Jim Procter	Merge branch 'develop' into releases/Release_2_11_Branch	blob \| commitdiff \| diff to current
2018-09-05	Jim Procter	JAL-3065 - amended commit 4906697ab6e5a79fbce3baae89f7... bug/JAL-3065_DH_keyPair_Exception_nogroovysettings	blob \| commitdiff \| diff to current
2018-07-23	gmungoc	JAL-3056 suppress menu options, and repoint Help, for...	blob \| commitdiff \| diff to current
2018-07-23	Jim Procter	Merge branch 'features/mchmmer' into merge/wsinterfaces...	blob \| commitdiff \| diff to current
2018-07-17	bsoares	JAL-3065	blob \| commitdiff \| diff to current
2018-07-11	Jim Procter	JAL-3048 refactored export settings to bean+dialog... Jalview-BH/JAL-3048_exportSettingsrefactor	blob \| commitdiff \| diff to current
2018-06-27	hansonr	JAL-3032 just the changes pulled already	blob \| commitdiff \| diff to current
2018-06-26	Jim Procter	Merge branch 'tasks/JAL-3035_remove_dasobert_dependency...	blob \| commitdiff \| diff to current
2018-06-26	Jim Procter	JAL-3035 - jalview-das is no more !	blob \| commitdiff \| diff to current
2018-06-23	hansonr	JAL-3026 JDesktop/JInternalFrames support + relative...	blob \| commitdiff \| diff to current
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