| 2011-10-10 |
jprocter | update author list in license for (JAL-826) |
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| 2011-10-04 |
jprocter | Merge remote-tracking branch 'remotes/origin/2_5_1_rna_... |
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| 2011-09-27 |
jprocter | apply version 2.7 copyright |
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| 2011-08-15 |
janengelhardt | JAL-891; Sorting of Structure logo implemented; bug... |
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| 2011-08-11 |
janengelhardt | JAL-885; hasRNAStructure method was introduced to Align... |
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| 2011-04-21 |
jprocter | allow an alignment annotation row to be removed and... |
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| 2010-11-12 |
jprocter | patch for JAL-700 |
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| 2010-09-23 |
jprocter | apply jalview code style |
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| 2010-09-23 |
jprocter | Jalview 2.6 source licence |
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| 2010-04-30 |
jprocter | jalview 2.5 release banner |
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| 2010-04-29 |
jprocter | isAligned assertion (bug 0008144) |
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| 2010-04-28 |
jprocter | group/annotation association housekeeping |
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| 2009-07-24 |
jprocter | implement new insert annotation row method and ensure... |
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| 2009-06-08 |
jprocter | apply gpl development license |
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| 2008-12-19 |
jprocter | left and right justify method |
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| 2008-12-05 |
jprocter | support for multiple accession retrieval from a databas... |
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| 2008-11-12 |
jprocter | javadoc and new method to get alignment sequence index... |
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| 2008-09-04 |
jprocter | merge from 2_4_Release branch |
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| 2008-07-18 |
jprocter | allow findSeq to begin *after* a given sequence in... |
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| 2007-11-30 |
jprocter | case invariant matching of seqeunce feature to sequence... |
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| 2007-08-30 |
jprocter | moved dataset sequence creation onto sequence method |
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| 2007-08-24 |
jprocter | dataset alignments have a reference count which must... |
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| 2007-07-13 |
jprocter | mapping bug fixes |
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| 2007-06-17 |
jprocter | AlignedCodonFrame holds mapping information between... |
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| 2007-05-10 |
jprocter | fixed array index out of bounds when not removing align... |
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| 2007-05-07 |
amwaterhouse | tIndex prevented deletion of last annotation |
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| 2007-05-02 |
jprocter | return flag indicating if annotations were actually... |
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| 2007-05-01 |
jprocter | removeAlignmentAnnotation only removes annotation objec... |
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| 2007-04-27 |
jprocter | documentation and getProperties method |
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| 2007-04-25 |
amwaterhouse | alignmentProperties added |
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| 2007-04-23 |
amwaterhouse | remove seqref annotations |
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| 2007-04-17 |
jprocter | copy constructors and AlignmentAnnotation sequenceRef... |
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| 2007-04-02 |
amwaterhouse | Destroy alignment moved to finalize |
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| 2007-04-02 |
amwaterhouse | Destroy aligment method added |
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| 2007-02-07 |
amwaterhouse | Formatting |
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| 2007-01-26 |
amwaterhouse | Only set the sequence oncecvs diff datamodel/Alignment... |
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| 2007-01-25 |
amwaterhouse | Annotation adjustment moved to EditCommand |
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| 2007-01-24 |
amwaterhouse | AdjustAnnotations needs position, number and insert |
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| 2007-01-23 |
amwaterhouse | Hidden representatives moved from sequence to viewport |
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| 2006-12-21 |
amwaterhouse | remove unnecessary import |
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| 2006-12-05 |
amwaterhouse | Sequence is char [] |
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| 2006-11-23 |
amwaterhouse | Dont make groups of hidden sequences |
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| 2006-11-13 |
amwaterhouse | Sequence colour moved to viewport |
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| 2006-11-08 |
amwaterhouse | currentSeq and set description in dataset |
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| 2006-11-03 |
amwaterhouse | Consensus may already have been removed |
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| 2006-10-27 |
amwaterhouse | New padgaps works out number of gaps to insert, delete |
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| 2006-10-25 |
amwaterhouse | We can delete sequence 0 |
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| 2006-10-24 |
amwaterhouse | maxIdLength redundant, deleteCols, trimLeft, removeGaps... |
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| 2006-10-12 |
amwaterhouse | HiddenSequences now array, not hashtable |
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| 2006-10-09 |
jprocter | fixed getCompactAlignment method to return proper cigar... |
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| 2006-10-06 |
amwaterhouse | AAFrequency optimized |
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| 2006-08-21 |
amwaterhouse | header updated |
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| 2006-08-21 |
jprocter | removeGaps method can record changes in alignment colum... |
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| 2006-08-18 |
amwaterhouse | dont remove all representative seqs on delete groups |
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| 2006-08-18 |
amwaterhouse | remove all representative seqs on delete groups |
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| 2006-08-15 |
amwaterhouse | Move features to dataset |
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| 2006-08-14 |
amwaterhouse | findSequenceMatch returns multiple sequences |
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| 2006-08-09 |
jprocter | alignment from seqCigars will correctly mark deleted... |
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| 2006-08-04 |
jprocter | recover original data for tree and pca as alignment... |
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| 2006-07-28 |
amwaterhouse | 1.1 compatible |
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| 2006-07-26 |
jprocter | Implemented CIGAR representation of an Alignment view... |
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| 2006-07-26 |
amwaterhouse | seqs[j] replaces current |
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| 2006-07-26 |
amwaterhouse | Remove left, right, empty cols work on hidden reps |
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| 2006-07-25 |
amwaterhouse | If seq has a dataset, dont clear it |
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| 2006-07-21 |
amwaterhouse | Remove note |
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| 2006-07-13 |
amwaterhouse | Sequence is private |
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| 2006-07-12 |
amwaterhouse | sequences are private in SequenceGroup |
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| 2006-07-07 |
amwaterhouse | Redundant Remove Redundancy Removed |
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| 2006-06-09 |
amwaterhouse | getSequencesArray |
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| 2006-05-11 |
amwaterhouse | Recently loaded files, urls, append sequences to Alignment |
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| 2006-05-10 |
amwaterhouse | addAnnotation with seqRef |
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| 2006-04-04 |
amwaterhouse | Pad gaps removes excess gaps |
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| 2006-03-16 |
amwaterhouse | getHiddenSequences |
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| 2006-02-15 |
amwaterhouse | Removed SuperGroup |
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| 2006-02-03 |
amwaterhouse | Add annotation with sequence ref updated |
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| 2006-01-30 |
amwaterhouse | AddAnnotation with start index |
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| 2006-01-11 |
jprocter | refactored Alignframe padGaps code to Alignment and... |
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| 2005-12-22 |
amwaterhouse | Watch for trim left/right null widths |
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| 2005-12-06 |
amwaterhouse | after merge |
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| 2005-09-22 |
amwaterhouse | isNucleotide |
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| 2005-07-06 |
amwaterhouse | Remove group if sequences are null |
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| 2005-06-30 |
amwaterhouse | Formatting changes |
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| 2005-06-08 |
amwaterhouse | replace space |
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| 2005-06-08 |
amwaterhouse | Formatted source |
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| 2005-06-08 |
amwaterhouse | GPL license added |
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| 2005-05-26 |
jprocter | fixed use of PID rather than 'Comparison' Alignment... |
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| 2005-05-25 |
jprocter | tidied up system.out messages and moved many to stderr. |
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| 2005-05-12 |
amwaterhouse | conservation removed |
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| 2005-05-03 |
amwaterhouse | 1.1 compatible |
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| 2005-04-28 |
amwaterhouse | set gap char modified |
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| 2005-04-01 |
amwaterhouse | Alignment Annotation added |
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| 2005-02-18 |
amwaterhouse | featuresAdded = false |
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| 2005-02-11 |
amwaterhouse | dont add new seqs to group |
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| 2005-02-10 |
amwaterhouse | dont add new sequences to null groups! |
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| 2005-02-10 |
amwaterhouse | isAligned method added |
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| 2005-01-24 |
amwaterhouse | Allow removal of colour when deleting groups |
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| 2005-01-21 |
amwaterhouse | SuperGroups added |
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| 2005-01-13 |
amwaterhouse | FindAllGroups added |
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| 2004-12-17 |
amwaterhouse | Use the isGap method in utils |
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| 2004-12-16 |
amwaterhouse | Remove redundancy implemented |
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git://source.jalview.org / jalview.git / history