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Merge branch 'merge_review/JAL-3490_2_11_2_develop' into develop
[jalview.git] / src / jalview / gui / AlignFrame.java
2020-09-21 Jim ProcterMerge branch 'merge_review/JAL-3490_2_11_2_develop... blob | commitdiff
2020-08-31 Jim ProcterJAL-3732 - sequences can be moved up/down in cursor... blob | commitdiff | diff to current
2020-08-17 Jim ProcterJAL-3490 merged with 2.11.2 develop blob | commitdiff | diff to current
2020-06-29 Jim ProcterJAL-3493 clear search highlights when escape/deselect all blob | commitdiff | diff to current
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol blob | commitdiff | diff to current
2020-04-21 gmungocJAL-3603 load annotation file from RELATIVE_URL in... blob | commitdiff | diff to current
2020-03-30 gmungocMerge branch 'develop' into Jalview-JS/develop blob | commitdiff | diff to current
2020-03-09 gmungocMerge branch 'develop' into feature/JAL-2422ChimeraX blob | commitdiff | diff to current
2020-02-21 Jim ProcterJAL-3186 avoid repainting twice in splitframe blob | commitdiff | diff to current
2020-02-21 Jim ProcterMerge branch 'develop' into features/JAL-3187_uitweaks blob | commitdiff | diff to current
2020-02-20 gmungocJAL-3187 repaint complement after loading on features blob | commitdiff | diff to current
2020-02-19 Jim ProcterJAL-3187 JAL-2764 close feature settings when parent... blob | commitdiff | diff to current
2020-02-18 Jim ProcterJAl-3187 JAL-3535 JAL-3534 update open feature settings... blob | commitdiff | diff to current
2020-02-17 Jim ProcterJAL-3187 fix for JAL-3533 on CDS/Protein tabbed feature... blob | commitdiff | diff to current
2020-02-17 Jim ProcterJAL-3187 JAL-3533 JAL-3535 set feature settings dialog... blob | commitdiff | diff to current
2020-02-12 Jim ProcterJAL-3187 view controller UI api method to show feature... blob | commitdiff | diff to current
2020-02-04 gmungocJAL-2422 pull up refactoring in preparation for Chimera... blob | commitdiff | diff to current
2019-07-16 gmungocJAL-3210 Merge branch 'develop' into trialMerge blob | commitdiff | diff to current
2019-06-24 Jim ProcterJAL-3330 merge styles onto originating view after fetch... blob | commitdiff | diff to current
2019-05-28 Ben SoaresJAL-1988 Some TEST code accidentally left in now remove... blob | commitdiff | diff to current
2019-04-18 hansonrCorrects incorrect calls to ViewportRanges.setEndSeq() blob | commitdiff | diff to current
2019-04-16 hansonrcaching of DnD files dropped blob | commitdiff | diff to current
2019-04-11 Jim ProcterMerge branch 'develop' into task/JAL-3130_Java_11_inves... blob | commitdiff | diff to current
2019-04-03 hansonrreplacing @j2sNative with @j2sIgnore where appropriate... blob | commitdiff | diff to current
2019-03-31 hansonrclean up implicit object refs blob | commitdiff | diff to current
2019-03-27 hansonrisJS cleanup blob | commitdiff | diff to current
2019-03-23 gmungocMerge branch 'develop' into Jalview-JS/develop blob | commitdiff | diff to current
2019-03-23 gmungocJAL-1889 explicit recalc of geometry for scale left... bug/JAL-1889serverTestSuite blob | commitdiff | diff to current
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... blob | commitdiff | diff to current
2019-03-20 gmungocMerge branch 'develop' into Jalview-JS/develop blob | commitdiff | diff to current
2019-03-20 gmungocJAL-3093 fine tuning of SeqPanel tooltip blob | commitdiff | diff to current
2019-03-19 Ben SoaresJAL-3130 Merge of JAL-3130_Java_11_investigations-Ben... blob | commitdiff | diff to current
2019-03-14 gmungocJAL-3210 JAL-3141 JAL-3056 disable backups in JalviewJS blob | commitdiff | diff to current
2019-03-13 gmungocJAL-3141 fix up merge artefact so BackupFilesTest passes blob | commitdiff | diff to current
2019-03-13 gmungocMerge branch 'develop' into trialMerge blob | commitdiff | diff to current
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... blob | commitdiff | diff to current
2019-03-07 gmungocMerge branch 'feature/JAL-3180colourAnnotationMenu... blob | commitdiff | diff to current
2019-03-07 gmungocJAL-2250 default Apply Colour to All Groups selected blob | commitdiff | diff to current
2019-03-05 gmungocMerge remote-tracking branch 'origin/features/JAL-2620a... blob | commitdiff | diff to current
2019-03-04 gmungocMerge branch 'bug/JAL-3099alignmentVisibleWidth' into... blob | commitdiff | diff to current
2019-03-01 gmungocMerge branch 'feature/JAL-3093wrappedModeTooltips'... blob | commitdiff | diff to current
2019-03-01 gmungocMerge branch 'bug/JAL-3158selectionBroadcasts' into... blob | commitdiff | diff to current
2019-02-28 gmungocMerge remote-tracking branch 'origin/feature/JAL-3141_b... blob | commitdiff | diff to current
2019-02-28 Jim ProcterMerge branch 'feature/JAL-3141_backupfiles_for211'... merge/develop_feature/JAL-3141_backupfiles_for211 blob | commitdiff | diff to current
2019-02-24 gmungocJAL-3198 SequenceGroup 'bulk constructor' without dupli... blob | commitdiff | diff to current
2019-02-22 gmungocJAL-2915 don't recalculate Overview on scroll to positi... blob | commitdiff | diff to current
2019-02-05 gmungocJAL-3048 JS-compatible confirm dialog on delete all blob | commitdiff | diff to current
2019-01-26 hansonrJalview.isJS() --> Platform.isJS(), DBRefEntry[] -... blob | commitdiff | diff to current
2019-01-18 Jim ProcterMerge branch 'feature/JAL-3063jaxbNoCastor' into featur... blob | commitdiff | diff to current
2019-01-18 hansonrcanvas line/font/pixel fixes; menu accelerators; blob | commitdiff | diff to current
2019-01-15 hansonrremoval of AlignmentFrame lines blob | commitdiff | diff to current
2019-01-09 gmungocJAL-3032 refine 'empty status message' test (JS issue... blob | commitdiff | diff to current
2019-01-09 hansonrcomment added in relation to status bar blob | commitdiff | diff to current
2019-01-04 gmungocJAL-3180 fix By Annotation selection state in colour... blob | commitdiff | diff to current
2018-12-18 gmungocJAL-3048 DialogRunnerI reduced to minimal implementation blob | commitdiff | diff to current
2018-12-14 Ben SoaresJAL-3130 single class testing on CLI with ant [ -Dclass... blob | commitdiff | diff to current
2018-12-10 gmungocJAL-3048 wip externalise trigger from RunResponse blob | commitdiff | diff to current
2018-12-10 gmungocJAL-3048 DialogRunner changes (wip) blob | commitdiff | diff to current
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor... blob | commitdiff | diff to current
2018-12-06 gmungocJAL-3048 response() renamed addResponse(); checkstyle... blob | commitdiff | diff to current
2018-11-28 gmungocJAL-3158 additional calls to reset 'selection changed... bug/JAL-3158selectionBroadcasts blob | commitdiff | diff to current
2018-11-08 gmungocJAL-3048 use JalviewJS compatible JalviewFileChooser... blob | commitdiff | diff to current
2018-11-05 Ben SoaresJAL-1988 Investigating... blob | commitdiff | diff to current
2018-10-31 gmungocMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into... feature/JAL-3144noJTree blob | commitdiff | diff to current
2018-10-29 gmungocJAL-3144 SequenceFetcher without JDatabaseTree blob | commitdiff | diff to current
2018-10-25 Ben SoaresJAL-3141 Ostensibly all backups working for alignment... blob | commitdiff | diff to current
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH... blob | commitdiff | diff to current
2018-10-16 Jim ProcterJAL-3127 use AlignViewportI.addGroup to create & propag... blob | commitdiff | diff to current
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating... blob | commitdiff | diff to current
2018-10-04 gmungocJAL-3132 set status message when over sequence id or... blob | commitdiff | diff to current
2018-09-19 gmungocJAL-3063 use JAXB for 'Save as Project' and load projec... blob | commitdiff | diff to current
2018-09-18 gmungocJAL-3063 New View via JAXB blob | commitdiff | diff to current
2018-09-18 gmungocJAL-3063 temporary extra menu option to save/load proje... blob | commitdiff | diff to current
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit... blob | commitdiff | diff to current
2018-09-11 gmungocJAL-3048 recoded edit View Name dialog for JalviewJS blob | commitdiff | diff to current
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch blob | commitdiff | diff to current
2018-09-10 gmungocJAL-3097 adjust viewport width on hiding columns bug/JAL-3097blankExtraColumns blob | commitdiff | diff to current
2018-09-07 Jim ProcterJAL-3107 update any group associated annotation rows... blob | commitdiff | diff to current
2018-08-27 hansonrJAL-3026 alignmentFrame.statusBar.setText -> .setStatus blob | commitdiff | diff to current
2018-08-24 hansonrJAL-3026 Java bug associated with File/String mods blob | commitdiff | diff to current
2018-08-17 gmungocJAL-3048 remove obsolete way of handling dialogs in... blob | commitdiff | diff to current
2018-08-14 gmungocJAL-3032 tidy AlignmentProperties display for JalviewJS blob | commitdiff | diff to current
2018-07-20 gmungocJAL-3048 revised AlignExportSettings dialog with respon... blob | commitdiff | diff to current
2018-07-19 gmungocJAL-3048 inlined 1-line methods, small refactor of... blob | commitdiff | diff to current
2018-07-19 gmungocJAL-3048 revert saveAs action so it works in Javascript too blob | commitdiff | diff to current
2018-07-11 Jim ProcterJAL-3026 JLabel for alignment properties in jalview-js blob | commitdiff | diff to current
2018-07-11 Jim ProcterMerge branch 'Jalview-BH/JAL-3048_exportSettingsrefacto... blob | commitdiff | diff to current
2018-07-11 Jim ProcterJAL-1551 formatting blob | commitdiff | diff to current
2018-07-11 Jim ProcterJAL-3048 refactored export settings to bean+dialog... Jalview-BH/JAL-3048_exportSettingsrefactor blob | commitdiff | diff to current
2018-07-10 Jim ProcterMerge branch 'Jalview-BH/JAL-3026' of source.jalview... blob | commitdiff | diff to current
2018-07-10 gmungocJAL-3048 obsolete method deleted blob | commitdiff | diff to current
2018-07-10 Jim ProcterJAL-3048 switch from 'dialogdata' to DialogRunner for... blob | commitdiff | diff to current
2018-07-03 hansonrMerge remote-tracking branch 'origin/Jalview-BH/JAL... blob | commitdiff | diff to current
2018-07-02 hansonrJAL-3026 File...Reload working blob | commitdiff | diff to current
2018-07-02 hansonrJAL-3026 Java+JavaScript fix for GD#95 blob | commitdiff | diff to current
2018-07-02 Jim ProcterJAL-3048 remove TODOs Jalview-BH/JAL-3048_dialogs blob | commitdiff | diff to current
2018-07-02 Jim ProcterJAL-3048 File->VCF load refactored blob | commitdiff | diff to current
2018-07-02 Jim ProcterJAL-3048 AlignFrame -> Save dialog refactored - patched... blob | commitdiff | diff to current
2018-06-29 Jim ProcterJAL-3048 use FileParse to transfer File to NewickFile... blob | commitdiff | diff to current
2018-06-29 Jim ProcterJAL-3048 AlignFrame->File->Load Tree adapted for js blob | commitdiff | diff to current
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