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[jalview.git] / src / jalview / gui / AlignFrame.java

2014-01-29	Jim Procter	JAL-1432 updated copyright notices	blob \| commitdiff
2013-06-17	Jim Procter	JAL-1312 more helpful error message when translation...	blob \| commitdiff \| diff to current
2012-10-22	jprocter	Jalview 2.8 Source Header	blob \| commitdiff \| diff to current
2012-10-03	jprocter	formatting	blob \| commitdiff \| diff to current
2012-09-25	jprocter	JAL-1031 JAL-1032 if selection is non-null but empty...	blob \| commitdiff \| diff to current
2012-09-25	jprocter	JAL-1173 try to catch OOMs when loading annotation...	blob \| commitdiff \| diff to current
2012-09-24	jprocter	JAL-958 enable logo display when normalise option selected	blob \| commitdiff \| diff to current
2012-08-29	jprocter	JAL-48 patch NPE when encountering an alignment window...	blob \| commitdiff \| diff to current
2012-08-28	jprocter	JAL-1145 patch: sequence associated annotation with...	blob \| commitdiff \| diff to current
2012-08-24	jprocter	JAL-1143 - ensure we revalidate annotation panel height...	blob \| commitdiff \| diff to current
2012-08-07	jprocter	JAL-975 JAL-1137 debug messages for web service client...	blob \| commitdiff \| diff to current
2012-08-01	jprocter	JAL-976 ensure protein disorder services appears in...	blob \| commitdiff \| diff to current
2012-06-15	jprocter	JAL-535 refactoring todo	blob \| commitdiff \| diff to current
2012-06-15	jprocter	Extended IProgressIndicator with method to check if...	blob \| commitdiff \| diff to current
2012-06-13	jprocter	javatidy	blob \| commitdiff \| diff to current
2012-06-12	jprocter	JAL-1115 refactor reordering code operating directly...	blob \| commitdiff \| diff to current
2012-06-12	jprocter	JAL-1115 refactor base collection for Alignment from...	blob \| commitdiff \| diff to current
2012-05-30	jprocter	JAL-969 - refactor colourscheme machinery from GUI...	blob \| commitdiff \| diff to current
2012-05-30	jprocter	JAL-1114 - refactor methods handling Vectors and Hashta...	blob \| commitdiff \| diff to current
2012-05-24	jprocter	TODO: JAL-1108	blob \| commitdiff \| diff to current
2012-05-24	jprocter	JAL-1078 - removed 'Load Score File' menu item and...	blob \| commitdiff \| diff to current
2012-05-24	jprocter	todo: JAL-1108	blob \| commitdiff \| diff to current
2012-05-23	jprocter	JAL-1067 report any warning messages to user	blob \| commitdiff \| diff to current
2012-05-23	jprocter	JAL-1067, JAL-1105 - refactor parser to fit Jalview...	blob \| commitdiff \| diff to current
2012-05-22	jprocter	Merge remote-tracking branch 'origin/Tcoffee_JAL-1065...	blob \| commitdiff \| diff to current
2012-04-24	jprocter	JAL-1075, JAL-1061, JAL-1064 - introduced second tier...	blob \| commitdiff \| diff to current
2012-04-20	jprocter	JAL-1064 - hack to create menu item label for each...	blob \| commitdiff \| diff to current
2012-03-27	jprocter	formatting	blob \| commitdiff \| diff to current
2012-03-27	jprocter	JAL-976 - tweak web services gui so empty menus don...	blob \| commitdiff \| diff to current
2011-11-03	jprocter	(JAL-978) discover JABA1 and JABA2 services and generat...	blob \| commitdiff \| diff to current
2011-10-28	jprocter	(JAL-963) refactor RNA helix helper class to schemes	blob \| commitdiff \| diff to current
2011-10-27	jprocter	(JAL-969) refactored alignmentViewport base class to...	blob \| commitdiff \| diff to current
2011-10-21	jprocter	Refactored alignment viewport to use common base, exten...	blob \| commitdiff \| diff to current
2011-10-11	jprocter	normalised logo rendering (JAL-958)	blob \| commitdiff \| diff to current
2011-10-10	jprocter	update author list in license for (JAL-826)	blob \| commitdiff \| diff to current
2011-10-07	jprocter	merge Jan and Lauren's RNA GUI changes into develop...	blob \| commitdiff \| diff to current
2011-10-04	jprocter	Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...	blob \| commitdiff \| diff to current
2011-09-27	jprocter	apply version 2.7 copyright	blob \| commitdiff \| diff to current
2011-09-16	jprocter	JAL-574 added option to enable/disable 'follow selectio...	blob \| commitdiff \| diff to current
2011-09-16	jprocter	JAL-940 - removed legacy service options from preferenc...	blob \| commitdiff \| diff to current
2011-09-16	jprocter	JAL-468 JAL-936 sort alignment by tree and autosort...	blob \| commitdiff \| diff to current
2011-09-15	jprocter	JAL-854 tweaked menu layout so services appear before...	blob \| commitdiff \| diff to current
2011-08-17	jprocter	JAL-853 use service action attribute to index services...	blob \| commitdiff \| diff to current
2011-07-29	janengelhardt	JAL-885; Implementation of StructureFrequency.java...	blob \| commitdiff \| diff to current
2011-07-25	janengelhardt	JAL-842; toy example to insert nucleotides in sequences...	blob \| commitdiff \| diff to current
2011-07-25	janengelhardt	JAL-841; Structure trigger token in jalview.io.Alignmen...	blob \| commitdiff \| diff to current
2011-07-25	janengelhardt	Start merging of Laurens Code	blob \| commitdiff \| diff to current
2011-07-21	jprocter	retrieve all sequences matching a particular name ...	blob \| commitdiff \| diff to current
2011-07-09	jprocter	refactored from PopupMenu (for JAL-860)	blob \| commitdiff \| diff to current
2011-02-18	jprocter	JAL-779 and some redraw refinements	blob \| commitdiff \| diff to current
2011-01-21	jprocter	relaxed ID matching parameter JAL-753 and sortBy JAL-754	blob \| commitdiff \| diff to current
2011-01-12	jprocter	selection should be sent after refresh happens	blob \| commitdiff \| diff to current
2011-01-07	jprocter	bulk associate pdb files dropped on to alignment :...	blob \| commitdiff \| diff to current
2010-12-17	jprocter	first publicly accessible test of JAL-724	blob \| commitdiff \| diff to current
2010-12-14	jprocter	refactored and patched for JAL-721	blob \| commitdiff \| diff to current
2010-09-23	jprocter	apply jalview code style	blob \| commitdiff \| diff to current
2010-09-23	jprocter	Jalview 2.6 source licence	blob \| commitdiff \| diff to current
2010-09-19	jprocter	name change for jaba	blob \| commitdiff \| diff to current
2010-09-19	jprocter	thread off sequence fetcher initialisation to make...	blob \| commitdiff \| diff to current
2010-09-10	jprocter	threaded off ws menu building to avoid initial pause...	blob \| commitdiff \| diff to current
2010-08-18	jprocter	JAL-612 - catch hidden OOM related to filling in cut...	blob \| commitdiff \| diff to current
2010-08-18	jprocter	1.5 annotation fix and thread safe menu update	blob \| commitdiff \| diff to current
2010-06-21	jprocter	ensure service menu is rebuilt after update listeners...	blob \| commitdiff \| diff to current
2010-06-19	jprocter	rejigged change support to make it (more) reliable	blob \| commitdiff \| diff to current
2010-06-11	jprocter	patched for JAL-531 - only display full symbol distribu...	blob \| commitdiff \| diff to current
2010-06-08	jprocter	trim hidden regions outside selection when copying...	blob \| commitdiff \| diff to current
2010-06-06	jprocter	patch for JAL-542	blob \| commitdiff \| diff to current
2010-05-21	jprocter	more robust discovery and preset support	blob \| commitdiff \| diff to current
2010-05-17	jprocter	more robust jws2 service discovery	blob \| commitdiff \| diff to current
2010-05-14	jprocter	First patch for * JAL-493	blob \| commitdiff \| diff to current
2010-04-30	jprocter	jalview 2.5 release banner	blob \| commitdiff \| diff to current
2010-04-29	jprocter	isAligned assertion (bug 0008144)	blob \| commitdiff \| diff to current
2010-04-29	jprocter	hide/show selected region menu entries and key bindings	blob \| commitdiff \| diff to current
2010-04-22	jprocter	feature settings is updated if new features are added...	blob \| commitdiff \| diff to current
2010-04-14	jprocter	profile visualizations are now logos	blob \| commitdiff \| diff to current
2010-04-01	jprocter	refactored copy of groupURL mechanism into new Envision...	blob \| commitdiff \| diff to current
2010-03-30	jprocter	group autoannotation and consensus display settings	blob \| commitdiff \| diff to current
2010-03-26	jprocter	enable feature display when feature settings is opened.	blob \| commitdiff \| diff to current
2010-02-10	jprocter	progress bar hashtable entry was not being removed...	blob \| commitdiff \| diff to current
2010-02-09	jprocter	todo	blob \| commitdiff \| diff to current
2009-10-14	jprocter	quick fix for nullpointer in column selection when...	blob \| commitdiff \| diff to current
2009-08-21	jprocter	prototype make groups from selection function and shift...	blob \| commitdiff \| diff to current
2009-07-24	jprocter	headless warning messages, prototype group annotation...	blob \| commitdiff \| diff to current
2009-06-19	jprocter	drag'n'drop a URL on to an alignment	blob \| commitdiff \| diff to current
2009-06-09	jprocter	fix null pointer when new view is created then closed...	blob \| commitdiff \| diff to current
2009-06-08	jprocter	ensure listeners are deregistered when panel is closed...	blob \| commitdiff \| diff to current
2009-06-01	jprocter	more graduated feature support	blob \| commitdiff \| diff to current
2009-02-06	jprocter	showUnconserved view and group setting	blob \| commitdiff \| diff to current
2009-01-07	jprocter	added higher level method to enable the display of...	blob \| commitdiff \| diff to current
2008-12-19	jprocter	new sort by length method, justify edit menu entries...	blob \| commitdiff \| diff to current
2008-12-15	jprocter	new callback handler allowing threads that request...	blob \| commitdiff \| diff to current
2008-12-04	jprocter	fetch database references for all EBI db + selected...	blob \| commitdiff \| diff to current
2008-11-12	jprocter	selection sending and receiving, autoscrolling to highl...	blob \| commitdiff \| diff to current
2008-09-08	jprocter	view settings in view submenu and user preferences...	blob \| commitdiff \| diff to current
2008-09-04	jprocter	merge from 2_4_Release branch	blob \| commitdiff \| diff to current
2008-08-26	jprocter	new thread for initting of DBRefFetcher with latest...	blob \| commitdiff \| diff to current
2008-08-26	jprocter	tooltip for fetch db refs and more generic regex for...	blob \| commitdiff \| diff to current
2008-08-15	jprocter	check for crossreferences every time the menus are...	blob \| commitdiff \| diff to current
2008-08-01	jprocter	new SequenceFetcher gui and visual delay indication...	blob \| commitdiff \| diff to current
2008-07-18	jprocter	Sequence label colour stored for each sequence group	blob \| commitdiff \| diff to current
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