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[jalview.git] / src / jalview / gui / AlignmentPanel.java

2022-02-11	Ben Soares	JAL-3949 Complete new abstracted logging framework...	blob \| commitdiff
2021-12-02	Jim Procter	JAL-3904 simple method to make an alignPanel the curren...	blob \| commitdiff \| diff to current
2020-03-30	gmungoc	Merge branch 'develop' into Jalview-JS/develop	blob \| commitdiff \| diff to current
2020-03-09	gmungoc	JAL-3412 update layout whenever desired id width changes testbuild/JAL-3412_getIdWidth_test	blob \| commitdiff \| diff to current
2019-10-08	gmungoc	Merge branch 'develop' into Jalview-JS/develop	blob \| commitdiff \| diff to current
2019-08-19	gmungoc	JAL-3412 calculateIdWidth - more consistency, constants...	blob \| commitdiff \| diff to current
2019-07-29	gmungoc	JAL-3386 correct wrapped width calculation for headless...	blob \| commitdiff \| diff to current
2019-07-29	gmungoc	JAL-3377 more reused of SeqCanvas.computeWrappedGeometry	blob \| commitdiff \| diff to current
2019-07-29	gmungoc	JAL-3377 Javadoc added for getWrappedHeight()	blob \| commitdiff \| diff to current
2019-07-29	gmungoc	JAL-3377 include seq-annotation spacing in getWrappedHe...	blob \| commitdiff \| diff to current
2019-04-18	hansonr	// BH 2018.04.18 comment: addNotify() is not appropriat...	blob \| commitdiff \| diff to current
2019-04-18	hansonr	removes unnecessary clearFastPaint	blob \| commitdiff \| diff to current
2019-04-18	hansonr	hack for fastpaint Java bug upshifting one line after...	blob \| commitdiff \| diff to current
2019-04-18	hansonr	adds an explicit clearing of the SeqCanvas fastPaint...	blob \| commitdiff \| diff to current
2019-03-13	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2019-03-11	gmungoc	Merge branch 'feature/JAL-3127_seqidChainshading' into...	blob \| commitdiff \| diff to current
2019-03-04	gmungoc	Merge branch 'bug/JAL-3099alignmentVisibleWidth' into...	blob \| commitdiff \| diff to current
2019-02-22	gmungoc	JAL-2915 don't recalculate Overview on scroll to positi...	blob \| commitdiff \| diff to current
2019-01-18	hansonr	canvas line/font/pixel fixes; menu accelerators;	blob \| commitdiff \| diff to current
2019-01-15	hansonr	removal of AlignmentFrame lines	blob \| commitdiff \| diff to current
2018-12-10	hansonr	Faster JTable processing; fixes Annotation painting...	blob \| commitdiff \| diff to current
2018-12-06	Ben Soares	JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...	blob \| commitdiff \| diff to current
2018-10-17	Jim Procter	Merge branch 'feature/JAL-3063JAXB' into Jalview-BH...	blob \| commitdiff \| diff to current
2018-10-16	Jim Procter	viewport flag to indicate when structure view needs...	blob \| commitdiff \| diff to current
2018-09-14	gmungoc	JAL-3116 parse EMBL XML with JAXB (todo: update unit...	blob \| commitdiff \| diff to current
2018-09-10	gmungoc	JAL-3099 use Alignment.getVisibleWidth() where wanted bug/JAL-3099alignmentVisibleWidth	blob \| commitdiff \| diff to current
2018-09-06	Jim Procter	JAL-2854 compute visible annotation panel height and...	blob \| commitdiff \| diff to current
2018-08-30	gmungoc	Merge branch 'bug/JAL-247pngShowHiddenSeqMarks' into...	blob \| commitdiff \| diff to current
2018-08-28	gmungoc	JAL-247 comment to clarify wrapped print algorithm	blob \| commitdiff \| diff to current
2018-08-28	gmungoc	JAL-247 print/export wrapped uses common code to draw...	blob \| commitdiff \| diff to current
2018-08-28	gmungoc	JAL-247 draw/print sequence ids now uses common code...	blob \| commitdiff \| diff to current
2018-08-27	gmungoc	JAL-247 comment to clarify wrapped print algorithm bug/JAL-247pngShowHiddenSeqMarks	blob \| commitdiff \| diff to current
2018-08-24	gmungoc	JAL-247 print/export wrapped uses common code to draw...	blob \| commitdiff \| diff to current
2018-08-24	gmungoc	JAL-247 draw/print sequence ids now uses common code...	blob \| commitdiff \| diff to current
2018-07-23	gmungoc	JAL-3048 all image export (alignment, tree, PCA, Jmol...	blob \| commitdiff \| diff to current
2018-07-20	gmungoc	JAL-3048 JalviewJS compliant use of LineartOptions...	blob \| commitdiff \| diff to current
2018-07-19	gmungoc	JAL-3048 inlined 1-line methods, small refactor of...	blob \| commitdiff \| diff to current
2018-07-09	gmungoc	JAL-1858 separate method highlightSearchResults with...	blob \| commitdiff \| diff to current
2018-05-25	gmungoc	JAL-2992 simpler heuristic for available height bug/JAL-2992panelHeight	blob \| commitdiff \| diff to current
2018-03-13	gmungoc	JAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)	blob \| commitdiff \| diff to current
2018-03-07	gmungoc	JAL-2913 use FIGURE_USERIDWIDTH for fixed id width...	blob \| commitdiff \| diff to current
2018-02-27	Jim Procter	Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104	blob \| commitdiff \| diff to current
2018-02-22	Jim Procter	Merge branch 'bug/JAL-2666' into releases/Release_2_10_...	blob \| commitdiff \| diff to current
2018-02-08	gmungoc	JAL-2666 basic initial fix for split screen scroll bug	blob \| commitdiff \| diff to current
2018-01-25	kiramt	JAL-2778 Reinstate id width adjuster	blob \| commitdiff \| diff to current
2018-01-15	kiramt	JAL-2759 Rename findColumnPosition and adjustForHiddenC...	blob \| commitdiff \| diff to current
2017-11-06	kiramt	JAL-2778 replace setScrollValues call in AlignmentPanel...	blob \| commitdiff \| diff to current
2017-11-03	kiramt	JAL-2778 Changed local repaint to alignment repaint...	blob \| commitdiff \| diff to current
2017-10-27	gmungoc	JAL-1793 spike branch updated to latest	blob \| commitdiff \| diff to current
2017-10-25	Jim Procter	Merge branch 'bug/JAL-2727closeAllFreeMemory' into...	blob \| commitdiff \| diff to current
2017-10-24	Jim Procter	Merge branch 'features/JAL-2608closeOverview' into...	blob \| commitdiff \| diff to current
2017-10-24	gmungoc	JAL-2738 update spike branch with latest	blob \| commitdiff \| diff to current
2017-10-23	Jim Procter	Merge branch 'bug/JAL-2609attemptedmerge' into develop	blob \| commitdiff \| diff to current
2017-10-23	Jim Procter	JAL-2609 remove unused AlignPanel.fastPaint flag and...	blob \| commitdiff \| diff to current
2017-10-23	Jim Procter	Merge branch 'bug/JAL-2739' into develop	blob \| commitdiff \| diff to current
2017-10-12	Jim Procter	JAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-09-22	kiramt	JAL-2739 Fix ported to 2.10.3	blob \| commitdiff \| diff to current
2017-09-15	gmungoc	JAL-2728 limit divider to ensure seqs visible (wip!)	blob \| commitdiff \| diff to current
2017-09-13	gmungoc	JAL-2727 null additional references on close	blob \| commitdiff \| diff to current
2017-09-12	gmungoc	JAL-2727 ensure ViewportRanges (and gapcounts) are...	blob \| commitdiff \| diff to current
2017-09-07	gmungoc	JAL-2511 invalidate scale panel holder on font change...	blob \| commitdiff \| diff to current
2017-09-07	gmungoc	JAL-2511 invalidate scale panel holder on font change... bug/JAL-2511idAlignment	blob \| commitdiff \| diff to current
2017-09-06	Jim Procter	JAL-2587 makes sure idWidthAdjuster is resized when...	blob \| commitdiff \| diff to current
2017-09-06	Jim Procter	JAL-2587 makes sure idWidthAdjuster is resized when...	blob \| commitdiff \| diff to current
2017-09-05	Jim Procter	Merge branch 'master' into portforward/JAL-2675_2102b1t...	blob \| commitdiff \| diff to current
2017-08-29	kiramt	JAL-2665 ported fix to 2.10.3. Doesn't work.	blob \| commitdiff \| diff to current
2017-08-29	kiramt	JAL-2665 Corrected to draw selections for wrapped printing	blob \| commitdiff \| diff to current
2017-08-28	gmungoc	Merge branch 'bug/JAL-2687concurrentModification' into...	blob \| commitdiff \| diff to current
2017-08-28	gmungoc	JAL-2608 close any Overview when alignment view is...	blob \| commitdiff \| diff to current
2017-08-28	kiramt	Merge remote-tracking branch 'origin/develop' into...	blob \| commitdiff \| diff to current
2017-08-28	kiramt	Merge remote-tracking branch 'origin/releases/Release_2...	blob \| commitdiff \| diff to current
2017-08-28	kiramt	JAL-2665 Changes for review comments; printing with... bug/JAL-2665	blob \| commitdiff \| diff to current
2017-08-21	gmungoc	Merge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-07-24	gmungoc	spike branch updated from latest features/JAL-2446	blob \| commitdiff \| diff to current
2017-07-19	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-07-18	gmungoc	JAL-147 don't scroll up beyond startRes = 0 bug/JAL-147scrollWrappedView	blob \| commitdiff \| diff to current
2017-07-18	gmungoc	JAL-147 corrected calculation of vertical scroll positi...	blob \| commitdiff \| diff to current
2017-07-06	gmungoc	JAL-1858 fast paint wrapped highlights unless view...	blob \| commitdiff \| diff to current
2017-07-03	gmungoc	JAL-147 ViewportRanges calculate wrapped vertical scrol...	blob \| commitdiff \| diff to current
2017-06-29	gmungoc	JAL-147 improved wrapped scrolling (including Overview...	blob \| commitdiff \| diff to current
2017-06-27	gmungoc	JAL-147 scroll wrapped panel by one width's worth at...	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-06-02	gmungoc	Merge branch 'features/JAL-2446NCList' into features...	blob \| commitdiff \| diff to current
2017-06-01	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-06-01	gmungoc	JAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn	blob \| commitdiff \| diff to current
2017-05-31	gmungoc	JAL-2574 preparation for Sequence.findFeatures(col1...	blob \| commitdiff \| diff to current
2017-05-30	kiramt	JAL-2573 Fixes for alignment < viewport width, and... JAL-2571	blob \| commitdiff \| diff to current
2017-05-29	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-05-18	gmungoc	JAL-2490 lookup features at each column position	blob \| commitdiff \| diff to current
2017-05-18	gmungoc	JAL-2543 html-encode quote characters in feature descri...	blob \| commitdiff \| diff to current
2017-05-15	kiramt	Merge remote-tracking branch 'origin/develop' into...	blob \| commitdiff \| diff to current
2017-05-15	kiramt	JAL-2491 Tidies	blob \| commitdiff \| diff to current
2017-05-12	kiramt	JAL-2491 Renamed comp scrolling flag for consistency...	blob \| commitdiff \| diff to current
2017-05-12	kiramt	JAL-2491 Tweaks for applet	blob \| commitdiff \| diff to current
2017-05-11	kiramt	JAL-2491 Unit tests and updates	blob \| commitdiff \| diff to current
2017-05-09	kiramt	JAL-2491 Tidies and more refactoring	blob \| commitdiff \| diff to current
2017-05-09	kiramt	JAL-2491 Resolved highlighting and initialisation problems	blob \| commitdiff \| diff to current
2017-05-08	kiramt	JAL-2491 Started moving other scrolling fns into viewpo...	blob \| commitdiff \| diff to current
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