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JAL-3416 remove flat as default for linux
[jalview.git] / src / jalview / gui /
2022-06-13 Ben SoaresJAL-1988 JAL-3416 Using the flatlaf-extras About, Prefe... tree | commitdiff
2022-01-27 Jim ProcterMerge branch 'bug/JAL-3633_read_proxy_settings_from_jal... tree | commitdiff
2022-01-26 Jim ProcterMerge branch 'task/JAL-3763_newDatasetForCds' into... tree | commitdiff
2021-12-13 Jim ProcterJAL-3855 JAL-3829 don’t need to make up alphafold model... tree | commitdiff
2021-12-08 Jim ProcterJAL-3616 update messages/tooltips/menu items to use... tree | commitdiff
2021-12-08 Jim ProcterJAL-3931 remove % and - from ids so Pymol doesn’t strip... tree | commitdiff
2021-12-08 Jim ProcterJAL-3929 URLencode pdbid to remove problematic characte... tree | commitdiff
2021-12-02 Jim ProcterJAL-3904 use new AlignPanel API method tree | commitdiff
2021-12-02 Jim ProcterJAL-3904 simple method to make an alignPanel the curren... tree | commitdiff
2021-11-08 Jim ProcterJAL-3855 JAL-1731 reuse the StructureViewer.fetchPdbFil... tree | commitdiff
2021-11-08 Jim ProcterJAL-3921 wait around until session file has been written tree | commitdiff
2021-11-05 Jim ProcterJAL-3829 remove duplicate IDs in 3DBeacons generated... tree | commitdiff
2021-11-05 Jim ProcterJAL-3829 format and tidy up unused code tree | commitdiff
2021-11-05 Jim ProcterJAL-3919 use model format field to ensure we get the... tree | commitdiff
2021-11-05 Jim ProcterJAL-3875 fully reset filter combo-box when fetch 3d... tree | commitdiff
2021-11-03 Jim ProcterJAL-3916 TODO for improved selection of covering structures tree | commitdiff
2021-11-03 Jim ProcterJAL-3915 remove RNAview opts from preferences. Still... tree | commitdiff
2021-11-02 Jim ProcterJAL-3875 test case and patch to verify the query 3d... tree | commitdiff
2021-10-18 Jim ProcterJAL-3904 override buildActionMenu to add in additional... tree | commitdiff
2021-10-18 Jim ProcterJAL-3904 failing test tree | commitdiff
2021-10-01 Jim ProcterJAL-3616 show name of structure viewer in ‘new view... tree | commitdiff
2021-10-01 Jim ProcterJAL-3616 explicit configure external viewer config tree | commitdiff
2021-10-01 Jim ProcterJAL-3829 fetch 3D beacons now started by clicking butto... tree | commitdiff
2021-10-01 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3... tree | commitdiff
2021-09-30 gmungocJAL-3371 more fine-grained slider; set Param slider... tree | commitdiff
2021-09-29 Ben SoaresJAL-3885 Made the database JComboBox have StringPair... tree | commitdiff
2021-09-29 Jim ProcterJAL-3829 report when 3d-beacons doesn’t provide any... tree | commitdiff
2021-09-24 Jim ProcterJAL-3829 open web page for 3d beacons structure by... features/r2_11_2/JAL-3829_3dbeacons tree | commitdiff
2021-09-24 Jim ProcterJAL-3829 right click to view popup menu to show link... tree | commitdiff
2021-09-24 Jim ProcterJAL-3829 abstract essential TDB metadata from the user... tree | commitdiff
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC... tree | commitdiff
2021-09-21 Jim ProcterMerge branch 'doc/JAL-3746_Release_2_11_2' into develop tree | commitdiff
2021-09-21 Jim ProcterJAL-3829 - callback finessing - leave DBRefFetcher... tree | commitdiff
2021-09-21 Jim ProcterJAL-3829 prefix PDBe filters with PDBe to make clear... tree | commitdiff
2021-09-21 Jim ProcterJAL-3829 alternative UX: need to select 3d-beacons... tree | commitdiff
2021-09-20 Jim ProcterJAL-3829 tests need to wait for dialog to be closed... tree | commitdiff
2021-09-20 Jim ProcterJAL-3829 TDBeacons fetcher needs a sequence with at... tree | commitdiff
2021-09-20 Jim ProcterJAL-3829 do better at detecting structure type, prompt... tree | commitdiff
2021-09-17 Jim ProcterJAL-3829 belt and braces check to make sure there is... tree | commitdiff
2021-09-16 Ben SoaresJAL-3774 combined changes from bug/JAL-3774_splitFrameF... tree | commitdiff
2021-09-16 Jim ProcterMerge branch 'develop' into doc/JAL-3746_Release_2_11_2 tree | commitdiff
2021-09-16 Ben SoaresJAL-3739 (combined) commits from feature/JAL-3739_useFo... tree | commitdiff
2021-09-15 Jim ProcterJAL-3746 fix bad merge from 2.11.1.4/5 branch cherrypick tree | commitdiff
2021-09-15 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile... tree | commitdiff
2021-09-15 Jim ProcterJAL-3638 JAL-3680 fix docs for Alt + Arrow LRUD in... tree | commitdiff
2021-09-14 Ben SoaresMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2021-09-14 Ben SoaresJAL-3521 Change grouped Jalview windows on linux taskba... tree | commitdiff
2021-09-14 Jim ProcterJAL-3855 JAL-3829 better checks on PDB or mmCIF file... tree | commitdiff
2021-09-14 Jim ProcterJAL-3829 JAL-3855 moved routing for retrieving structur... tree | commitdiff
2021-09-14 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3... tree | commitdiff
2021-09-14 Jim ProcterJAL-3829 avoid sending rubbish to PDBe search api tree | commitdiff
2021-09-14 Jim ProcterJAL-3829 some providers don’t provide model quality... tree | commitdiff
2021-09-14 Ben SoaresJAL-2422 More helpful highlighting/user guidance of... tree | commitdiff
2021-09-13 Jim ProcterJAL-3829 select single best TDB structure and select... tree | commitdiff
2021-09-10 Jim ProcterJAL-3829 provide both PDBe queries and 3D-Beacons queri... tree | commitdiff
2021-09-10 Jim ProcterJAL-3829 insert title for structures from PDBe tree | commitdiff
2021-09-10 Jim ProcterJAL-3829 update for v1.0 3d-beacons api spec tree | commitdiff
2021-09-08 Jim ProcterJAL-3829 refactor and JAL-3391 JAL-2935 first stab... tree | commitdiff
2021-09-08 Jim ProcterJAL-3829 allow client-side selection of structures... tree | commitdiff
2021-09-06 Jim ProcterJAL-3829 work in progress - look up additional metadata... tree | commitdiff
2021-09-03 Jim ProcterJAL-3829 comments on the 3D structure chooser’s initial... tree | commitdiff
2021-09-03 Jim ProcterJAL-3865 isolate PDB and TDB clients and last query... tree | commitdiff
2021-09-03 Jim ProcterJAL-3829 JAL-3865 StructureChooserQuerySource implement... tree | commitdiff
2021-09-03 Jim ProcterJAL-3829 refactored FilterOption provider to the Struct... tree | commitdiff
2021-09-02 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3... tree | commitdiff
2021-09-02 gmungocJAL-3509 JAL-1842 minor tidying of code tree | commitdiff
2021-09-02 gmungocJAL-3509 better placement of call to notifyFeaturesChan... tree | commitdiff
2021-09-02 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 generalised Alphafold retrieval mechanism... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 Structure chooser specific FTS interface and... tree | commitdiff
2021-08-30 Jim ProcterMerge branch 'feature/JAL-3855_ebi_alphafold_import... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 3d-beacons structure chooser logic (not yet... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 pulled out more of the FTS dependent parts... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 3d-beacons has a custom alignment retrieval... tree | commitdiff
2021-08-30 Jim ProcterJAL-3829 pushed the PDBFTSClient specific code to new... tree | commitdiff
2021-07-27 Jim ProcterJAL-3855 check if an alpha fold ID and retrieve using... tree | commitdiff
2021-04-06 Jim ProcterJAL-3832 dummy 3d-beacons database client and code... tree | commitdiff
2021-03-19 Ben SoaresJAL-3503 Added a Startup tab in Preferences, with gui... tree | commitdiff
2021-02-18 gmungocJAL-3822 pass panel height and width to wrapped geometr... tree | commitdiff
2021-02-18 gmungocJAL-2422 remove temporary patch (requires ChimeraX... tree | commitdiff
2021-02-10 Ben SoaresJAL-3251 On linux set (sun.awt.X11.XToolkit.)awtAppClas... tree | commitdiff
2021-02-04 gmungocJAL-2422 a fix and a fudge for two failing ChimeraX... tree | commitdiff
2021-01-21 gmungocJAL-3038 corrected code that reads editable JComboBox... tree | commitdiff
2020-12-11 Ben SoaresJAL-3594 Defintely want SplashScreen to appear in the... tree | commitdiff
2020-12-11 Ben SoaresJAL-3594 Adjustments to allow JalviewJS to use ChannelP... tree | commitdiff
2020-12-09 Ben SoaresJAL-3594 Images for splash screen tree | commitdiff
2020-12-09 Ben SoaresJAL-3594 JAL-3728 Added taskbar icons to desktop and... tree | commitdiff
2020-12-08 Ben SoaresMerge branch 'merge/develop_and_rebase_squashed_merge_J... tree | commitdiff
2020-12-08 Ben SoaresJAL-3594 Change main window title tree | commitdiff
2020-12-04 Ben SoaresJAL-3594 Added rotating logo png tree | commitdiff
2020-12-04 Ben SoaresJAL-3594 New jalview.util.ChannelProperties to get... tree | commitdiff
2020-12-01 Ben SoaresJAL-3609 JAL-3775 Tests for jalview.bin.HiDPISetting tree | commitdiff
2020-11-13 Ben SoaresJAL-3775 Eclipse re-formatting commit tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Apply (proxy) button enabled when needed tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Small changes to allow future fitting with... tree | commitdiff
2020-11-13 Ben SoaresJAL-3275 JAL-3633: JAL-3275 Turned Preferences into... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Set proxy preferences before web calls in... tree | commitdiff
2020-11-13 Ben SoaresJAL-3633 Memory only proxy auth password storage. Open... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 Added Proxy Authentication credentials in... tree | commitdiff
2020-11-12 Ben SoaresJAL-3633 Remember system set proxy properties. Add... tree | commitdiff
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