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Push 1793 latest to spike branch
[jalview.git] / src / jalview / io / vcf / VCFLoader.java
2017-10-20 gmungocPush 1793 latest to spike branch blob | commitdiff
2017-10-05 gmungocJAL-2738 update spikes/mungo blob | commitdiff | diff to current
2017-10-04 gmungocJAL-2738 fix bug of premature exit from adding attributes blob | commitdiff | diff to current
2017-10-04 gmungocJAL-2738 match consequence "Allele" to VCF allele;... blob | commitdiff | diff to current
2017-10-03 gmungocJAL-2738 copy to spikes/mungo blob | commitdiff | diff to current
2017-10-03 gmungocJAL-2738 code formatting blob | commitdiff | diff to current
2017-10-02 gmungocJAL-2738 code tidy up, null checks &c blob | commitdiff | diff to current
2017-10-02 gmungocJAL-2738 filter VEP consequence data to that for curren... blob | commitdiff | diff to current
2017-09-29 gmungocJAL-2738 one sequence feature per (SNP) VCF allele blob | commitdiff | diff to current
2017-09-28 gmungocJAL-2738 separate thread to load VCF; update FeatureSet... blob | commitdiff | diff to current
2017-09-28 gmungocJAL-1796 GeneLociI as distinguished DBRefEntry blob | commitdiff | diff to current
2017-09-26 gmungocJAL-2738 transfer VCF variant features to CDS sequences blob | commitdiff | diff to current
2017-09-26 gmungocJAL-2738 unit test for reverse strand gene blob | commitdiff | diff to current
2017-09-25 gmungocJAL-2738 use complement base for a VCF variant on rever... blob | commitdiff | diff to current
2017-09-25 gmungocJAL-2738 one constant in codebase for "alleles" attribu... blob | commitdiff | diff to current
2017-09-25 gmungocJAL-2738 extract SNP variants from SNP or MIXED variant... blob | commitdiff | diff to current
2017-09-22 gmungocJAL-2738 extract utility method to MappingUtils blob | commitdiff | diff to current
2017-09-22 gmungocJAL-2738 correct handling of reverse strand genes blob | commitdiff | diff to current
2017-09-22 gmungocJAL-2738 lookup GRCh38/37 gene mapping blob | commitdiff | diff to current
2017-09-21 gmungocJAL-2738 compute VCF on peptide, extract AF (allele... blob | commitdiff | diff to current
2017-09-21 gmungocJAL-2738 PoC of Load VCF file on to gene sequence blob | commitdiff | diff to current