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JAL-3111 sign the uninstaller script .. again
[jalview.git] / src /
2019-06-26 Jim ProcterJAL-3334 fix - always load full SO to resolve the seque... tree | commitdiff
2019-06-26 Jim ProcterJAL-3111 get rid of nasty tab characters tree | commitdiff
2019-06-26 Jim ProcterJAL-3332 test to check for duplicate db sources and... tree | commitdiff
2019-06-26 Jim ProcterJAL-3330 javadoc tree | commitdiff
2019-06-24 Jim ProcterJAL-3330 merge styles onto originating view after fetch... tree | commitdiff
2019-06-24 Jim ProcterJAL-3330 dbreffetcher: record any feature display model... tree | commitdiff
2019-06-24 Jim ProcterJAL-3330 merge styles onto originating views when show... tree | commitdiff
2019-06-24 Jim ProcterJAL-3330 mergeFeatureStyles - needs test coverage tree | commitdiff
2019-06-19 Ben SoaresMerge branch 'merge/JAL-3310_and_JAL-3300' into develop tree | commitdiff
2019-06-19 Ben SoaresJAL-3321 Last pieces of the getdown-launcher.jar upgrad... tree | commitdiff
2019-06-19 Jim ProcterMerge branch 'develop' into documentation/JAL-3111_rele... tree | commitdiff
2019-06-18 gmungocJAL-3313 don't double count mapped codons tree | commitdiff
2019-06-18 Jim ProcterMerge branch 'bug/JAL-2830_editManglesDatasetSequence... tree | commitdiff
2019-06-18 Ben SoaresMerge branch 'develop' into merge/JAL-3310_and_JAL... tree | commitdiff
2019-06-18 Jim ProcterMerge branch 'bug/JAL-3286duplicatePdbQuery' into develop tree | commitdiff
2019-06-18 Ben SoaresJAL-3312 Fixed SHIFT-CMD/SHIFT-CTRL Key combinations... tree | commitdiff
2019-06-17 Ben SoaresJAL-3310 JAL-3300 two getdown fixes merged tree | commitdiff
2019-06-14 Ben SoaresJAL-3295 pre-merged code with JAL-3295 branch which... tree | commitdiff
2019-06-14 Ben SoaresJAL-3278 A system.out.println turned into a cache.log... tree | commitdiff
2019-06-14 Jim ProcterJAL-3111 report build type and commit in stdout from... tree | commitdiff
2019-06-14 Jim ProcterJAL-3299 JAL-3280 javadoc on BuildDetails bean tree | commitdiff
2019-06-13 Jim ProcterMerge branch 'bug/JAL-3295_CMD_select_not_working_in_se... tree | commitdiff
2019-06-13 gmungocJAL-3143 recognise lnc_RNA as transcript tree | commitdiff
2019-06-12 Ben SoaresJAL-3295 Fixed CMD-select of sequences in alignment... tree | commitdiff
2019-06-11 gmungocJAL-3143 also parse "phase" from JSON response if present tree | commitdiff
2019-06-11 gmungocJAL-3288 fixes for gain/lose focus tree | commitdiff
2019-06-07 gmungocMerge branch 'bug/JAL-3288splitFrameMenusJava11' into... tree | commitdiff
2019-06-07 gmungocJAL-3187 Viewport schema attributes for showComplementF... tree | commitdiff
2019-06-07 gmungocJAL-3251 added optional attributes Sequence.biotype... tree | commitdiff
2019-06-07 gmungocJAL-2738 use GeneLocus extends DBRefEntry to hold chrom... tree | commitdiff
2019-06-05 gmungocJAL-3288 override JInternalFrame.setSelected() to avoid... bug/JAL-3288splitFrameMenusJava11 tree | commitdiff
2019-06-04 gmungocJAL-2386 avoid duplicate pdbids in free text query bug/JAL-3286duplicatePdbQuery tree | commitdiff
2019-05-31 Ben SoaresJAL-3247 Adjusted Uninstall Old Jalview.app to just... tree | commitdiff
2019-05-29 gmungocJAL-2738 error logging if no ##reference found tree | commitdiff
2019-05-29 gmungocJAL-2738 accept .csi, default to GRCh37:homo_sapiens... tree | commitdiff
2019-05-28 Ben SoaresJAL-1988 Some TEST code accidentally left in now remove... tree | commitdiff
2019-05-27 Ben SoaresJAL-3141 Added HashMap types for Java 1.8 compatibility tree | commitdiff
2019-05-27 Ben SoaresMerge branch 'task/JAL-3141_Customise_checkbox' into... tree | commitdiff
2019-05-27 Ben SoaresJAL-3141 Object array cast missing tree | commitdiff
2019-05-27 Ben SoaresMerge branch 'task/JAL-3247_JAL-3246_JAL-3254_JAL-3236_... tree | commitdiff
2019-05-27 Ben SoaresJAL-3141 Generified the JvUtils.buildComboWithTooltips... tree | commitdiff
2019-05-25 Ben SoaresJAL-3141 One more error log fix tree | commitdiff
2019-05-25 Ben SoaresJAL-3141 Added tooltips on Schemes dropdown and Customi... tree | commitdiff
2019-05-24 Ben SoaresJAL-3141 Fixes recommended from gmc's test tree | commitdiff
2019-05-24 Ben SoaresJAL-3141 Fixed vertical size of the example filenames... tree | commitdiff
2019-05-24 Ben SoaresJAL-3141 Reworked a lot of BackupFiles to allow the... tree | commitdiff
2019-05-22 Ben SoaresMerge branch 'bug/JAL-3141_backupfiles_prefs_widget_dis... tree | commitdiff
2019-05-21 Ben SoaresJAL-3247 Launcher start improvements. RPM and DEB no... tree | commitdiff
2019-05-20 Ben SoaresJAL-3254 Improved memory setting (allows mem for OS... tree | commitdiff
2019-05-06 gmungocJAL-3239 release note tree | commitdiff
2019-05-06 gmungocMerge remote-tracking branch 'origin/bug/JAL-3239monosp... tree | commitdiff
2019-05-06 gmungocJAL-3244 delete obsolete method tree | commitdiff
2019-05-02 gmungocJAL-3239 draw EPS or SVG one character at a time (even... bug/JAL-3239monospacedEps tree | commitdiff
2019-05-02 gmungocJAL-3244 renamed Platform method for clarity bug/JAL-3244jmolWindows tree | commitdiff
2019-05-01 gmungocJAL-3244 ignore file path separator when comparing... tree | commitdiff
2019-04-30 gmungocJAL-3241 simplified enum constructors for classloadabil... tree | commitdiff
2019-04-29 gmungocJAL-2738 JAL-2743 update unit test to match new VCF... tree | commitdiff
2019-04-26 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2019-04-26 gmungocJAL-2743 class Javadoc tree | commitdiff
2019-04-26 gmungocJAL-2738 JAL-2743 properties to map VCF header to speci... tree | commitdiff
2019-04-26 Ben SoaresJAL-3233 Added isAMac check for -Xdock:icon addition... tree | commitdiff
2019-04-26 gmungocJAL-3010 borderless 'x' for "delete this filter condition" tree | commitdiff
2019-04-26 gmungocJAL-2808 better tooltip 'delete this condition' tree | commitdiff
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Some fixes in install4j template... tree | commitdiff
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Added lines to check for updates... tree | commitdiff
2019-04-24 Jim ProcterMerge branch 'task/JAL-3225_Integration_Gradle_building... tree | commitdiff
2019-04-23 Jim ProcterMerge branch 'develop' into bug/JAL-3224_getdown_change... tree | commitdiff
2019-04-20 gmungocJAL-2791 tailored message if find fails on selection... tree | commitdiff
2019-04-18 gmungocJAL-3193 dbSource always "ENSEMBL" tree | commitdiff
2019-04-16 gmungocMerge branch 'bug/JAL-3218scalePanelPopups' into develop tree | commitdiff
2019-04-15 Ben SoaresJAL-3130 Helper classes to take Class Exceptions when... tree | commitdiff
2019-04-15 gmungocJAL-3193 no separatge EnsemblGenomes source in Sequence... tree | commitdiff
2019-04-11 Jim ProcterMerge branch 'develop' into task/JAL-3130_Java_11_inves... tree | commitdiff
2019-04-10 gmungocJAL-3193 rest.ensemblgenomes.org merged to rest.ensembl.org tree | commitdiff
2019-04-10 gmungocJAL-3018 REST version updated to 10.0 tree | commitdiff
2019-04-05 Ben SoaresJAL-3130 This commit concentrates on the Mac OS X DMG... tree | commitdiff
2019-04-04 Ben SoaresJAL-3130 trying to be Java 1.8 source compatible -... tree | commitdiff
2019-04-03 gmungocJAL-3021 show Sequence Details with cursor at top tree | commitdiff
2019-04-02 gmungocJAL-3218 allow both Hide and Reveal in scale panel... bug/JAL-3218scalePanelPopups tree | commitdiff
2019-04-01 Ben SoaresJAL-3130 JAL-3007 Added gradle build for Java 11 and... tree | commitdiff
2019-03-28 gmungocMerge branch 'feature/JAL-3181linkOrdering' into develop tree | commitdiff
2019-03-27 gmungocJAL-2620 improved error reporting on failure to load... tree | commitdiff
2019-03-25 gmungocJAL-2717 adjusted code so default correctly returned... tree | commitdiff
2019-03-23 gmungocJAL-1889 explicit recalc of geometry for scale left... bug/JAL-1889serverTestSuite tree | commitdiff
2019-03-23 gmungocJAL-1889 remove debug logging, add updateLayout() tree | commitdiff
2019-03-22 Ben SoaresJAL-3130 mark some deprecated methods in Regex as ... tree | commitdiff
2019-03-22 gmungocJAL-1889 more debug logging tree | commitdiff
2019-03-21 gmungocJAL-1889 better debug logging tree | commitdiff
2019-03-21 gmungocJAL-1889 temporary debug in findColumn() tree | commitdiff
2019-03-21 Ben SoaresJAL-3130 Replaced deprecated Class.newInstance() with... tree | commitdiff
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... tree | commitdiff
2019-03-20 Ben SoaresJAL-3141 Disabled the 'Include Backup Files' checkbox... tree | commitdiff
2019-03-20 gmungocJAL-3093 fine tuning of SeqPanel tooltip tree | commitdiff
2019-03-20 gmungocJAL-3212 unit test and fix for Scale Panel bug tree | commitdiff
2019-03-19 Ben SoaresJAL-3141 Removed 'Save Project' File Menu item tree | commitdiff
2019-03-19 Ben SoaresJAL-3141 patch for Backups preferences enable/disable... tree | commitdiff
2019-03-19 Ben SoaresJAL-3130 remove some comments on quit. fix modules... tree | commitdiff
2019-03-19 Ben SoaresJAL-3130 Merge of JAL-3130_Java_11_investigations-Ben... tree | commitdiff
2019-03-15 gmungocJAL-2964 missed branch for restore link tree to all... tree | commitdiff
2019-03-15 gmungocJAL-3203 Overview show hidden default false also in... tree | commitdiff
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