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JAL-1919 refined structure view annotation settings to work for both PDB and mmCIF
[jalview.git] / src /
2016-03-15 tcofoegbuJAL-1919 refined structure view annotation settings... tree | commitdiff
2016-03-11 tcofoegbuJAL-1818 reimplemented sequence and annotation processi... tree | commitdiff
2016-03-10 tcofoegbudevelop merge tree | commitdiff
2016-03-10 tcofoegbuJAL-2025 added code to stanitise query for structure... tree | commitdiff
2016-03-10 tcofoegbuJAL-2024 code to enforce case insensitivity for manual... tree | commitdiff
2016-03-03 tcofoegbuJAL-1919 fixed bug causing PDBfile test failure tree | commitdiff
2016-03-03 tcofoegbuJAL-1919 updated unicode mapping symbol tree | commitdiff
2016-03-03 tcofoegbuJAL-1919 updated unicode symbol for mapping tree | commitdiff
2016-03-03 tcofoegbuJAL-1919 PDBfile and JmolParser refactor tree | commitdiff
2016-02-26 tcofoegbudevelop merge tree | commitdiff
2016-02-26 tcofoegbuJAL-2009 reverted 'RES NUM' feature back to 'RESNUM' tree | commitdiff
2016-02-26 tcofoegbuJAL-1994 updated implementation for broken tests tree | commitdiff
2016-02-26 tcofoegbuJAL-1994 fix for broken tests tree | commitdiff
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API.... tree | commitdiff
2016-02-23 tcofoegbudevelop merge tree | commitdiff
2016-02-23 tcofoegbuJAL-1720 renamed Structure Chooser filters according... tree | commitdiff
2016-02-22 tcofoegbuJAL-1720 JAL-2002 improvement for 'uniprot coverage... tree | commitdiff
2016-02-22 tcofoegbuJAL-1944 bugfix for error when exporting hidden sequenc... tree | commitdiff
2016-02-19 tcofoegbuJAL-2009 Codes to enable storing inserted residues... tree | commitdiff
2016-02-09 tcofoegbumerge develop tree | commitdiff
2016-02-09 tcofoegbuJAL-1976 catch and handle OOM Error tree | commitdiff
2016-02-09 tcofoegbuJAL-1976 Added progress indicators for HTML_SVG and... tree | commitdiff
2016-02-09 tcofoegbuJAL-1975 updated image export pipeline to produce more... tree | commitdiff
2016-02-09 tcofoegbuJAL-1957 deleted stale comment tree | commitdiff
2016-02-09 tcofoegbumerge tree | commitdiff
2016-02-09 tcofoegbuJAL-1957 enabled multi-chain mapping and highlight... tree | commitdiff
2016-02-05 gmungocJAL-2006 scale even very small score ranges to a usable... tree | commitdiff
2016-02-04 gmungocJAL-2005 added (stable) sort methods parameterised by tree | commitdiff
2016-02-04 gmungocJAL-599 bug fixed so array of visible types is populated tree | commitdiff
2016-01-29 tcofoegbumerge from develop tree | commitdiff
2016-01-29 tcofoegbuJAL-1979 refactor out duplicated similar block of code... tree | commitdiff
2016-01-27 tcofoegbuJAL-1479 fixed off-by-one error in SIFTS mapping output... tree | commitdiff
2016-01-26 tcofoegbudevelop merge tree | commitdiff
2016-01-26 tcofoegbuJAL-1999 JAL-1479 implemented configurable fail-safe... tree | commitdiff
2016-01-25 tcofoegbuJAL-1998 bugfix for division by zero error for PDB... tree | commitdiff
2016-01-21 tcofoegbuJAL-1479 JAL-1979 bugfix to check entire annotation... tree | commitdiff
2016-01-21 tcofoegbuJAL-1479 JAL-1979 updated the modified-aminoacid triple... tree | commitdiff
2016-01-21 tcofoegbuJAL-1919 basic support for importing and viewing mmCIF... tree | commitdiff
2016-01-11 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2016-01-11 gmungocJAL-1989 additional ways to 'mirror' show/hide columns... tree | commitdiff
2016-01-11 tcofoegbuJAL-1990 added a progress indicator for Structure Choos... tree | commitdiff
2016-01-11 tcofoegbumerge tree | commitdiff
2016-01-11 tcofoegbuJAL-1991 bug fix for some flat-file printers to check... tree | commitdiff
2016-01-11 gmungocJAL-1989 map hidden column ranges tree | commitdiff
2016-01-11 gmungocJAL-1989 more unit tests and encapsulation for ColumnSe... tree | commitdiff
2016-01-07 tcofoegbumerge tree | commitdiff
2016-01-07 tcofoegbuJAL-1479 implemented timestamp based caching of SIFTS... tree | commitdiff
2015-12-09 Jim ProcterJAL-1982 hotfix to prevent NPE with applet launch on... tree | commitdiff
2015-12-03 gmungocJAL-1827 code and comment tidy up tree | commitdiff
2015-12-02 gmungocJAL-1827 refactored to handle missing residues better tree | commitdiff
2015-12-02 gmungocJAL-1827 added overloaded method for convenience tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 refactored DBRef fetching code to StructureCho... tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 applet build debug tree | commitdiff
2015-11-25 tcofoegbuJAL-1479 bugfix after decoupling SIFTS preference settings tree | commitdiff
2015-11-23 tcofoegbuJAL-1479 commented out DBRef fetching code from SIFTS... tree | commitdiff
2015-11-17 tcofoegbuJAL-1479 Refactored Sifts configuration preference... tree | commitdiff
2015-11-16 tcofoegbuJAL-1967 JAL-1479 refactored sequence<->structure mappi... tree | commitdiff
2015-11-13 tcofoegbuJAL-1479 added transfer of residue annotation for SIFTS... tree | commitdiff
2015-11-11 tcofoegbuJAL-1479 JAL-1957 Added code to enable simultaneous... tree | commitdiff
2015-11-11 tcofoegbumerge tree | commitdiff
2015-11-11 tcofoegbuJAL-1957 JAL-1479 Further optimisation of SIFTs Client... features/JAL-1479_SIFTS-mapping tree | commitdiff
2015-11-10 tcofoegbuJAL 1960 added code to restrict structure chooser to... tree | commitdiff
2015-11-05 tcofoegbuJAL-1479 SiftClient house keeping tree | commitdiff
2015-11-05 tcofoegbuJAL-1942 JAL-1479 refactored SequenceI.getDBRef/Sequenc... tree | commitdiff
2015-11-02 tcofoegbuJAL-1955 Uniprot sequence fetcher refactor tree | commitdiff
2015-10-30 Jim ProcterJAL-1954 rejigged PFAMFile to split on ‘\t’ if no space... tree | commitdiff
2015-10-29 tcofoegbuJAL-1926 JAL-1479 updated PDBfile fetcher to add source... tree | commitdiff
2015-10-28 tcofoegbuJAL-1479 added support for SIFTs mapping output viewing... tree | commitdiff
2015-10-28 tcofoegbuJAL-1952 bugfix tree | commitdiff
2015-10-28 tcofoegbuJAL-1887 JAL-1479 bugfix for incorrect start/end for... tree | commitdiff
2015-10-23 gmungocJAL-1943 don't try to unmarshal non-xml files in V1... tree | commitdiff
2015-10-22 tcofoegbuJAL-1479 added basic support for SIFTs mapping - more... tree | commitdiff
2015-10-22 tcofoegbuJAL-1479 implemented preferences for SIFTs / Needleman... tree | commitdiff
2015-10-22 tcofoegbuJAL-1942 JAL-1479 DBRefFetcher refactor tree | commitdiff
2015-10-22 gmungocJAL-1932 TrimRegionCommand bug fix, tests and purge... tree | commitdiff
2015-10-15 tcofoegbuJAL-1479 refactored SequenceI interface - changed getDB... tree | commitdiff
2015-10-15 Jim ProcterJAL-1923 formatting tree | commitdiff
2015-10-15 Jim ProcterJAL-1923 add groups to codon-complement and notify... tree | commitdiff
2015-10-15 Jim ProcterJAL-1923 fix: don’t add group twice tree | commitdiff
2015-10-14 tcofoegbuJAL-1926 created interface for DBRefEntry tree | commitdiff
2015-10-14 tcofoegbuJAL-1926 added supporting model changes to enable savin... tree | commitdiff
2015-10-13 tcofoegbuJAL-1479 added SIFTS XSD and generated JAXB bindings... tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 add licensing tree | commitdiff
2015-10-08 Jim ProcterJAL-1894 organise imports tree | commitdiff
2015-10-08 tcofoegbumerge tree | commitdiff
2015-10-07 Jim ProcterJAL-1894 source formatting tree | commitdiff
2015-10-07 Jim ProcterJAL-1894 organise imports tree | commitdiff
2015-10-07 tcofoegbuJAL-1912 added documentation features/JAL-1912_biojson-per-sequence-annotation tree | commitdiff
2015-10-07 Jim ProcterJAL-1912 formatting tree | commitdiff
2015-10-07 Jim ProcterJAL-1912 javadoc for adjustForAlignment stating current... tree | commitdiff
2015-10-07 Jim ProcterJAL-1912 efficiency: look up sequenceMapping once per... tree | commitdiff
2015-10-07 Jim ProcterMerge branch 'features/JAL-1912_biojson-per-sequence... tree | commitdiff
2015-10-05 tcofoegbuJAL-1912 house keeping tree | commitdiff
2015-10-05 tcofoegbuJAL-1912 added null check for SequenceMapping variable... tree | commitdiff
2015-10-05 gmungocJAL-1812 set/return currentAlFrame for Groovy in headle... tree | commitdiff
2015-10-05 Jim ProcterMerge branch 'develop' into features/JAL-1912_biojson... tree | commitdiff
2015-10-05 gmungocJAL-1684 JAL-1452 new applet parameters defaultColourNuc tree | commitdiff
2015-10-05 tcofoegbuJAL-1908 bugfix tree | commitdiff
2015-10-05 tcofoegbuJAL-1912 updated AnnotationDisplaySettingPojo tree | commitdiff
2015-10-02 gmungocJAL-1815 restore split frame geometry including horizon... tree | commitdiff
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