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JAL-3760 refactor nucleotide proportion test to per-sequence and return false if...
[jalview.git] / src /
2020-10-28 Jim ProcterJAL-3760 refactor nucleotide proportion test to per... tree | commitdiff
2020-10-28 Jim Procterfix for JAL-3765 tree | commitdiff
2020-09-21 Jim ProcterMerge branch 'merge_review/JAL-3490_2_11_2_develop... tree | commitdiff
2020-09-14 Ben SoaresMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2020-09-14 Ben SoaresMerge branch 'feature/JAL-3615gzipXfam' into develop tree | commitdiff
2020-09-14 Ben SoaresJAL-3609 HiDPI scale setting done via system prop in... tree | commitdiff
2020-09-10 gmungocJAL-3518 removed unneeded override in ChimeraCommands tree | commitdiff
2020-09-03 gmungocJAL-3648 resize annotation panel after dragging to... tree | commitdiff
2020-09-03 Ben SoaresMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2020-08-31 Jim ProcterJAL-3732 - sequences can be moved up/down in cursor... tree | commitdiff
2020-08-31 gmungocJAL-3018 Ensembl reviewed REST version updated to 13.0 tree | commitdiff
2020-08-31 gmungocJAL-1191 use Cache.log for logging tree | commitdiff
2020-08-31 gmungocJAL-1191 reduce logging level for warnings tree | commitdiff
2020-08-24 gmungocJAL-3018 updated reviewed REST version to 12.0 tree | commitdiff
2020-08-21 Jim ProcterJAL-3615 code tidy, improve unit test tree | commitdiff
2020-08-20 Ben SoaresJAL-2656 better read of (potential) gzip magic bytes tree | commitdiff
2020-08-18 gmungocJAL-2656 Java 8 compatible test for gzipped, refactored... tree | commitdiff
2020-08-17 Jim ProcterJAL-3490 don't init the combo box's history cache for... tree | commitdiff
2020-08-17 Jim ProcterJAL-3490 merged with 2.11.2 develop tree | commitdiff
2020-08-17 Jim ProcterMerge branch 'task/JAL-3597memoryLeakTest' into develop tree | commitdiff
2020-08-12 Ben SoaresMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2020-08-12 Jim ProcterMerge branch 'task/JAL-3608_property_set_laf_and_tests... tree | commitdiff
2020-08-09 Ben SoaresJAL-3691 Changed .toUppoerCase().startsWith(...) to... tree | commitdiff
2020-08-04 Ben SoaresJAL-3477 Added -help text for jvmmempc and jvmmemmax... tree | commitdiff
2020-08-03 Jim ProcterMerge branch 'bug/JAL-2983negativeSliderMin' into develop tree | commitdiff
2020-07-29 Jim ProcterJAL-3371 JAL-2983 don't modify 'extent' of slider ... tree | commitdiff
2020-07-28 Jim ProcterMerge branch 'feature/JAL-3615gzipXfam' into develop tree | commitdiff
2020-07-28 Jim ProcterJAL-3615 JAL-2656 missing import after cherrypick tree | commitdiff
2020-07-28 Jim ProcterJAL-2656 recognise non-HTTP URI input streams as gzippe... tree | commitdiff
2020-07-28 Jim ProcterJAL-2656 recognise Gzipped file input streams by their... tree | commitdiff
2020-07-27 Jim ProcterJAL-3697 show total number of features not shown tree | commitdiff
2020-07-27 Jim ProcterJAL-3696 log the error message from the exception to... tree | commitdiff
2020-07-14 gmungocJAL-1421 last change tidied up properly tree | commitdiff
2020-07-14 gmungocJAL-1421 types added to nameHash and nodeHash maps tree | commitdiff
2020-07-14 gmungocJAL-3597 additional references nulled, bug in test... tree | commitdiff
2020-07-07 Ben SoaresJAL-3608 Changes from code review CR-JAL-236 tree | commitdiff
2020-07-07 gmungocJAL-1424 streamlined message checker, corrected applet... tree | commitdiff
2020-07-06 gmungocJAL-3311 JAL-3141 JAL-3144 tidying obsolete message... tree | commitdiff
2020-07-02 gmungocJAL-2656 JAL-3615 check response headers to test for... tree | commitdiff
2020-07-02 gmungocJAL-3615 used gzip endpoints for Pfam and Rfam tree | commitdiff
2020-06-29 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... tree | commitdiff
2020-06-29 Jim ProcterJAL-3493 clear search highlights when escape/deselect all tree | commitdiff
2020-06-29 gmungocJAL-3674 more finessed asynchronous structure commands tree | commitdiff
2020-06-29 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2020-06-29 gmungocJAL-3518 corrected pulled up focusView() command tree | commitdiff
2020-06-29 gmungocJAL-3518 corrected action on pulled up closeViewer() tree | commitdiff
2020-06-28 gmungocJAL-3551 PyMOL command constants tidied tree | commitdiff
2020-06-28 gmungocJAL-3551 fit to window (zoom) command for PyMOL tree | commitdiff
2020-06-26 Jim ProcterJAL-3673 make sure font metrics are updated if dealing... tree | commitdiff
2020-06-26 Jim ProcterJAL-3518 fix highlighting in Jalview for selections... tree | commitdiff
2020-06-26 Jim ProcterJAL-3672 debug=false means no debug output tree | commitdiff
2020-06-26 Jim ProcterJAL-3672 more efficient when debug not enabled tree | commitdiff
2020-06-26 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress... tree | commitdiff
2020-06-26 gmungocJAL-3518 tidy up asynchronous structure command execution tree | commitdiff
2020-06-25 gmungocJAL-2010 unused prototype method removed tree | commitdiff
2020-06-25 gmungocJAL-3518 pull up [get|list]ResidueAttributes to Structu... tree | commitdiff
2020-06-23 gmungocJAL-3518 separation of ChimeraXManager, pull up of... tree | commitdiff
2020-06-23 gmungocJAL-3518 pull up closeViewer() and external viewer... tree | commitdiff
2020-06-01 gmungocJAL-3518 more test coverage for structure commands tree | commitdiff
2020-05-29 gmungocJAL-2422 test updated tree | commitdiff
2020-05-29 gmungocMerge branch 'feature/JAL-3551Pymol' into develop tree | commitdiff
2020-05-29 gmungocJAL-3551 null pointer defence while structure files... feature/JAL-3551Pymol tree | commitdiff
2020-05-28 gmungocJAL-3551 corrected Pymol open session command tree | commitdiff
2020-05-28 gmungocJAL-2422 correct ChimeraX save/open session commands... tree | commitdiff
2020-05-26 gmungocJAL-3624 log when SIFTS mapping fails tree | commitdiff
2020-05-26 gmungocMerge branch 'feature/JAL-3624siftsInJS' into develop tree | commitdiff
2020-05-26 gmungocJAL-1761 pattern for structure viewer construction... tree | commitdiff
2020-05-24 Jim ProcterJAL-3407 redact Java 8 incompatible '<>' with anonymous... tree | commitdiff
2020-05-21 gmungocJAL-3551 copy Jalview features to Pymol 'p' (with pull... tree | commitdiff
2020-05-21 gmungocJAL-2422 highlight ChimeraX selection (ChimeraX-1.0... tree | commitdiff
2020-05-20 gmungocJAL-3626 use Viewer.scriptWait() to send Jmol commands... tree | commitdiff
2020-05-19 gmungocJAL-3621 corrected sequence feature sort and test tree | commitdiff
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol tree | commitdiff
2020-05-19 gmungocJAL-3624 use temp file for SIFT download in JS, correct... feature/JAL-3624siftsInJS tree | commitdiff
2020-05-18 gmungocJAL-3463 avoid Thread.sleep() as not supported in SwingJS tree | commitdiff
2020-05-18 gmungocJAL-3621 update to intervalstore v1.1 tree | commitdiff
2020-05-18 gmungocMerge branch 'Jalview-JS/develop' into develop tree | commitdiff
2020-05-18 gmungocJAL-3613 remove debug code committed in error tree | commitdiff
2020-05-15 gmungocJAL-3619 default silently to Jmol if viewerType absent... tree | commitdiff
2020-05-15 gmungocJAL-3551 pull up Close Viewer dialog to base class tree | commitdiff
2020-05-15 gmungocMerge branch 'feature/JAL-3551Pymol' into feature/JAL... tree | commitdiff
2020-05-15 gmungocJAL-3551 raise label on ('highlight') structure residue... tree | commitdiff
2020-05-12 gmungocJAL-3518 tidy method, remove obsolete comment tree | commitdiff
2020-05-12 gmungocJAL-3518 failsafe check for null Jmol filename while... tree | commitdiff
2020-05-11 gmungocJAL-3551 concatenate colour by sequence commands for... tree | commitdiff
2020-05-11 gmungocJAL-2422 JAL-3551 viewer text/variables generalised... tree | commitdiff
2020-05-11 gmungocJAL-2422 ChimeraX paths (versions up to 1.0) added... tree | commitdiff
2020-05-11 gmungocJAL-1333 additional Chimera versions for Windows instal... tree | commitdiff
2020-05-11 gmungocJAL-2422 restore saved ChimeraX session from project tree | commitdiff
2020-05-04 Ben SoaresJAL-3608 streamlined LaF methods and allow specificying... tree | commitdiff
2020-05-03 Ben SoaresJAL-3608 also look at user pref PREFERRED_LAF tree | commitdiff
2020-05-01 gmungocJAL-3613 check sequence overlap when matching search... tree | commitdiff
2020-05-01 Ben SoaresJAL-3608 Now reporting the actual LookAndFeel in Java... tree | commitdiff
2020-05-01 Ben SoaresJAL-3608 Added java builtin NimbusLookAndFeel option... tree | commitdiff
2020-04-30 Ben SoaresJAL-3608 Enforcing MetalLookAndFeel as default on linux... tree | commitdiff
2020-04-30 Ben SoaresJAL-3608 Added 'metal' option for laf property tree | commitdiff
2020-04-30 gmungocJAL-3551 save structure viewer session refactorings... tree | commitdiff
2020-04-30 gmungocJAL-3551 tidied error handling for HTTP request tree | commitdiff
2020-04-25 gmungocMerge branch 'develop' into feature/JAL-3551Pymol tree | commitdiff
2020-04-23 soaresJAL-3608 JAL-3416 Added a 'gtk' option. Not currently... tree | commitdiff
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