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JAL-2505 JAL-2542 SequenceFeatures.shift() to shift all positional
[jalview.git] / src /
2017-05-24 gmungocJAL-2505 JAL-2542 SequenceFeatures.shift() to shift... tree | commitdiff
2017-05-24 gmungocJAL-2542 correct adjustment of sequence features for... tree | commitdiff
2017-05-24 gmungocJAL-2505 delete and readd modified feature after Cut... tree | commitdiff
2017-05-23 gmungocJAL-2490 find features for export as GFF, JAL-2548... tree | commitdiff
2017-05-23 gmungocJAL-2490 tidy code and tests for feature export in... tree | commitdiff
2017-05-23 gmungocJAL-2490 improved lookup of features for Export Feature... tree | commitdiff
2017-05-23 gmungocJAL-2480 methods to get features for group tree | commitdiff
2017-05-22 gmungocJAL-2505 use setter not direct access to sf.description tree | commitdiff
2017-05-22 gmungocJAL-2505 updates after conflicting merge of JAL-2504 tree | commitdiff
2017-05-22 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-22 gmungocJAL-2504 update the right feature colour when creating... bug/JAL-2510amendFeatures tree | commitdiff
2017-05-22 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-22 gmungocJAL-2544 check feature overlaps selection region tree | commitdiff
2017-05-22 gmungocJAL-2543 identify as JSON before HTML tree | commitdiff
2017-05-22 gmungocJAL-2546 JAL-2490 efficient lookup of features, correct... tree | commitdiff
2017-05-22 gmungocJAL-2480 always include all non-positional features... tree | commitdiff
2017-05-22 kiramtMerge remote-tracking branch 'origin/bug/JAL-2256'... tree | commitdiff
2017-05-22 Jim ProcterJAL-2418 patch build - broken htsjdk import tree | commitdiff
2017-05-19 gmungocJAL-2526 removed redundant call to Sequence.findPosition() tree | commitdiff
2017-05-19 gmungocJAL-2490 refactored test for 'hasFeatures' tree | commitdiff
2017-05-19 gmungocJAL-2544 only include features in selected columns... tree | commitdiff
2017-05-19 gmungocJAL-2490 performant lookup of features for sorting tree | commitdiff
2017-05-19 gmungocJAL-2490 only count sequences where feature overlap... tree | commitdiff
2017-05-19 gmungocJAL-2505 unit test for sort by feature density, Javadoc tree | commitdiff
2017-05-18 gmungocJAL-2490 initial unit tests prior to refactoring tree | commitdiff
2017-05-18 Jim ProcterJAL-2388 return empty hidden columns for fully visible... tree | commitdiff
2017-05-18 gmungocJAL-2490 lookup sequence features for "labelClass" tree | commitdiff
2017-05-18 gmungocJAL-2490 lookup features at each column position tree | commitdiff
2017-05-18 gmungocJAL-2543 html-encode quote characters in feature descri... tree | commitdiff
2017-05-18 gmungocJAL-2490 retrieve visible features only tree | commitdiff
2017-05-18 kiramtJAL-2256 Corrected AllCols/Rows iterator behaviour... bug/JAL-2256 tree | commitdiff
2017-05-17 Jim ProcterMerge branch 'bug/JAL-2510amendFeatures' into develop tree | commitdiff
2017-05-17 Jim ProcterMerge branch 'features/JAL-2447experimentalFlag' into... tree | commitdiff
2017-05-17 gmungocJAL-2504 use (and update) defaults for new feature... tree | commitdiff
2017-05-17 gmungocMerge branch 'develop' into bug/JAL-2510amendFeatures tree | commitdiff
2017-05-16 gmungocJAL-2505 unreachable code (for many years) removed tree | commitdiff
2017-05-16 gmungocJAL-2505 refactored method removed tree | commitdiff
2017-05-16 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-16 gmungocJAL-2505 set helix number as feature group in SequenceF... tree | commitdiff
2017-05-16 gmungocJAL-2403 simplify instantiation / configuration of... tree | commitdiff
2017-05-16 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-16 kiramtJAL-2522 Missed fix to applet tree | commitdiff
2017-05-16 gmungocJAL-2505 refactor to set type and group in SequenceFeat... tree | commitdiff
2017-05-16 gmungocJAL-2525 put in missing "transcript" feature type tree | commitdiff
2017-05-16 kiramtJAL-2388 Rationalised hashCode method in HiddenColumns tree | commitdiff
2017-05-16 gmungocJAL-2505 set SequenceFeature group in constructor tree | commitdiff
2017-05-15 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... tree | commitdiff
2017-05-15 Jim ProcterJAL-2507 capitalisation for annotation lines generated... tree | commitdiff
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-15 Jim ProcterJAL-2507 case insensitive recognition of annotation... tree | commitdiff
2017-05-15 gmungocJAL-2532 new feature types and colour changes from... tree | commitdiff
2017-05-15 Jim ProcterJAL-2535 quick hack to implement posterior probabilitie... tree | commitdiff
2017-05-15 kiramtMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-15 kiramtJAL-2388 Add missed optimisation tree | commitdiff
2017-05-15 Jim ProcterMerge branch 'features/JAL-2376_add-horizontal-bar... tree | commitdiff
2017-05-15 Jim ProcterJAL-2371 create a default ResidueShader when constructi... tree | commitdiff
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-15 gmungocJAL-2490 use findFeatures() for efficient feature overl... tree | commitdiff
2017-05-15 gmungocJAL-2480 redundant code (from merge?) removed tree | commitdiff
2017-05-15 gmungocJAL-2480 redundant code removed tree | commitdiff
2017-05-12 gmungocJAL-2490 performant findFeaturesAtRes tree | commitdiff
2017-05-12 gmungocJAL-2483 efficient lookup of feature types and groups... tree | commitdiff
2017-05-12 gmungocJAL-2525 get sequence features for Ontology term(s... tree | commitdiff
2017-05-12 gmungocJAL-2480 more efficient contains check on add; tidied... tree | commitdiff
2017-05-12 gmungocJAL-2480 java.util.RangeComparator renamed IntRangeComp... tree | commitdiff
2017-05-12 Jim ProcterMerge branch 'features/JAL-2435splitScreenFont' into... tree | commitdiff
2017-05-12 Jim ProcterJAL-2435 mirror antiAlias setting between cDNA and... tree | commitdiff
2017-05-12 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... tree | commitdiff
2017-05-12 Jim ProcterJAL-2388 checkbox in overview popup for applet tree | commitdiff
2017-05-12 gmungocJAL-2480 efficient test for features present on sequence tree | commitdiff
2017-05-12 Jim ProcterMerge branch 'features/JAL-2228_efficient_featurecounts... tree | commitdiff
2017-05-12 gmungocJAL-2480 renamed java.util.RangeComparator to IntRangeC... tree | commitdiff
2017-05-11 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... tree | commitdiff
2017-05-11 Jim ProcterJAL-2509 JAL-2507 allow whitespace in GS annotation... tree | commitdiff
2017-05-11 Jim ProcterJAL-2507 test if an annotation is ‘whitespace’ tree | commitdiff
2017-05-11 Jim ProcterJAL-2507 Annotation.EMPTY_ANNOTATION - non-null whitesp... tree | commitdiff
2017-05-10 kiramtMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-10 kiramtJAL-2522 Fix to cursor scrolling tree | commitdiff
2017-05-09 Jim ProcterJAL-2509 extend set of brackets recognised by stockholm... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 unpaired RNA marked as ‘ ‘ in Stockholm SS... tree | commitdiff
2017-05-09 Jim ProcterJAL-2507 output secondary structure regardless of prese... tree | commitdiff
2017-05-09 gmungocJAL-1632 correct i18n and NPE tree | commitdiff
2017-05-09 gmungocJAL-2480 include sequenceFeatureStore in createDatasetS... tree | commitdiff
2017-05-09 gmungocJAL-2483 JAL-2481 fixed findAllFeatures to handle null... tree | commitdiff
2017-05-09 kiramtJAL-2388 Added checkbox to toggle hidden columns menu... tree | commitdiff
2017-05-09 gmungocJAL-2505 use constructors to set (what will be) final... tree | commitdiff
2017-05-08 gmungocJAL-2505 set type,desc,begin,end,group,score in Sequenc... tree | commitdiff
2017-05-08 gmungocJAL-2505 refactored SequenceFeature construction so... tree | commitdiff
2017-05-08 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-08 gmungocJAL-1632 i18n for warning messages tree | commitdiff
2017-05-08 gmungocMerge remote-tracking branch 'origin/bug/JAL-2515'... tree | commitdiff
2017-05-08 kiramtJAL-2515 Id panel in applet updated for NPE on urlProvider bug/JAL-2515 tree | commitdiff
2017-05-08 kiramtJAL-2512 And applet tree | commitdiff
2017-05-08 kiramtJAL-2512 Fix to show non-gap positions in None colour... tree | commitdiff
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree... tree | commitdiff
2017-05-05 gmungocJAL-964 JAL-2510 update Feature Settings from Amend... tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-05-04 gmungocJAL-2506 allow graduated colour as default in new Seque... tree | commitdiff
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