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Merge branch 'task/JAL-2562_SequenceI.findPosition' into develop
[jalview.git] / src /
2017-04-27 Jim ProcterJAL-2494 javadoc for AnnotatedCollectionI.findAnnotations tree | commitdiff
2017-04-27 Jim ProcterJAL-2432 desktop: filter/select columns by threshold... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 JAL-2432 code tidy tree | commitdiff
2017-04-27 Jim ProcterJAL-2432 left justify value shown after adjusting thres... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 JAL-2432 percentile filter for select/hide... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 shade occupancy from light grey to black for... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 don’t show symbol counts under histogram ... tree | commitdiff
2017-04-27 Jim ProcterJAL-1933 occupancy row has a space below it for counts tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-26 kiramtMerge remote-tracking branch 'origin/features/JAL-2388h... tree | commitdiff
2017-04-26 kiramtJAL-2388 last separation of hidden columns/col selection tree | commitdiff
2017-04-26 kiramtJAL-2388 Tidies and unit tests tree | commitdiff
2017-04-25 kiramtJAL-2388 Missed file from previous commit tree | commitdiff
2017-04-25 kiramtJAL-2388 Reverted and re-did applet changes tree | commitdiff
2017-04-25 kiramtJAL-2388 Tidies and other corrections so applet compiles tree | commitdiff
2017-04-25 kiramtJAL-2388 And corrected OverviewCanvas for applet tree | commitdiff
2017-04-25 kiramtJAL-2388 Updated applet to show/hide hidden regions... tree | commitdiff
2017-04-25 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-04-25 tcofoegbuJAL-2489 bug fix tree | commitdiff
2017-04-25 kiramtJAL-2388 Working hidden regions hide/show in desktop tree | commitdiff
2017-04-24 gmungocJAL-2487 remove redundant refreshGUI to minimise thread... tree | commitdiff
2017-04-24 kiramtMerge remote-tracking branch tree | commitdiff
2017-04-24 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-24 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-04-24 kiramtJAL-2388 Finished split of hidden columns and selected... tree | commitdiff
2017-04-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-24 gmungocJAL-2424 final contig now an inclusive range bug/JAL-2424getVisibleContigs tree | commitdiff
2017-04-24 kiramtJAL-2439 Fixed opposite out-by-one problem in wrapped... tree | commitdiff
2017-04-24 kiramtMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-04-24 kiramtJAL-2439 Fix to hidden column marker being one row... tree | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... tree | commitdiff
2017-04-21 gmungocJAL-2423 tweak tree panel title, add Spanish text tree | commitdiff
2017-04-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-21 tcofoegbuJAL-2485 Bug fix to filter out uniprot response header... tree | commitdiff
2017-04-21 kiramtJAL-2388 Tidies tree | commitdiff
2017-04-21 kiramtJAL-2388 Make sure resizing still works tree | commitdiff
2017-04-21 kiramtJAL-2388 Alignment col and row collections with iterators tree | commitdiff
2017-04-19 gmungocJAL-2435 mirror font changes with middle mouse drag tree | commitdiff
2017-04-19 gmungocMerge branch 'develop' into features/JAL-2435splitScree... tree | commitdiff
2017-04-19 tcofoegbuJAL-2482 added null check tree | commitdiff
2017-04-19 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-04-18 tcofoegbuJAL-2482 Bugfix tree | commitdiff
2017-04-12 gmungocJAL-1632 removed check for aligned sequences for Tree... tree | commitdiff
2017-04-12 gmungocJAL-1632 remove unused check for sequences aligned tree | commitdiff
2017-04-12 gmungocJAL-2403 ensure array held in Matrix is immutable tree | commitdiff
2017-04-12 gmungocJAL-2403 public static methods to convert distance... tree | commitdiff
2017-04-12 gmungocJAL-1632 one PCA/Tree per panel, closed when panel... tree | commitdiff
2017-04-11 tcofoegbuPull from develop features/JAL-2473_set-minimium-dimensions tree | commitdiff
2017-04-11 gmungocJAL-2403 improved ScoreModelI hierarchy as per Kira... tree | commitdiff
2017-04-11 tcofoegbuJAL-2473 removed unused fields in JalviewDialog tree | commitdiff
2017-04-11 gmungocJAL-2428 Javadoc tree | commitdiff
2017-04-11 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-10 gmungocJAL-2403 unit tests for PCA.computeSimilarity, signatur... tree | commitdiff
2017-04-10 tcofoegbuMerge branch 'bug/JAL-2255_seq-fetcher-broken-on-linux... tree | commitdiff
2017-04-10 tcofoegbuJAL-2255 Bug fix bug/JAL-2255_seq-fetcher-broken-on-linux tree | commitdiff
2017-04-10 tcofoegbuMerge branch 'develop' into bug/JAL-2255_seq-fetcher... tree | commitdiff
2017-04-10 gmungocJAL-2403 removed remaining jvCalcMode references from PCA tree | commitdiff
2017-04-10 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-10 tcofoegbuJAL-2473 added improvement to apply default / custom... tree | commitdiff
2017-04-10 gmungocJAL-2361 option to save on OK of changed named colour... tree | commitdiff
2017-04-09 gmungocJAL-2393 remove unused commented code tree | commitdiff
2017-04-07 gmungocJAL-2393 code tidying for review comments tree | commitdiff
2017-04-07 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-04-06 gmungocJAL-2361 make a modified saved scheme the backout check... tree | commitdiff
2017-04-05 gmungocJAL-2384 JAL-2371 update ResidueShader on change of... tree | commitdiff
2017-04-05 gmungocJAL-2361 simplify constructors, select unsaved but... tree | commitdiff
2017-04-05 gmungocJAL-2361 apply any saved changes to current colour... tree | commitdiff
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2314 tree | commitdiff
2017-04-03 gmungocMerge branch 'develop' into bug/JAL-2461 bug/JAL-2461 tree | commitdiff
2017-04-03 gmungocJAL-2435 further adjustments to behaviour in split... tree | commitdiff
2017-04-03 gmungocMerge branch 'develop' into features/JAL-2435splitScree... tree | commitdiff
2017-03-31 gmungocJAL-2405 additional checks for circular reference in... tree | commitdiff
2017-03-31 gmungocMerge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView tree | commitdiff
2017-03-31 gmungocJAL-2430 code tidy, unit test for Jmol hidden column... tree | commitdiff
2017-03-31 gmungocJAL-2435 tidy code tree | commitdiff
2017-03-31 gmungocJAL-1608 unused method removed tree | commitdiff
2017-03-31 gmungocJAL-2435 slightly more sensible behaviour changing... tree | commitdiff
2017-03-30 gmungocMerge branch 'develop' into features/JAL-2435splitScree... tree | commitdiff
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-1608createGroups bug/JAL-1608createGroups tree | commitdiff
2017-03-30 gmungocJAL-1608 leave Create Group, Remove Group menu items... tree | commitdiff
2017-03-30 gmungocJAL-2401 code and help tidy for review comments tree | commitdiff
2017-03-30 gmungocJAL-2401 don't apply lower case colour to upper case tree | commitdiff
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2399textColour bug/JAL-2399textColour tree | commitdiff
2017-03-30 gmungocMerge branch 'develop' into bug/JAL-2346annotationChoice tree | commitdiff
2017-03-29 gmungocMerge branch 'develop' into bug/JAL-1608createGroups tree | commitdiff
2017-03-29 gmungocJAL-2416 JAL-728 reduced dependency on Blosum62 impleme... tree | commitdiff
2017-03-29 gmungocJAL-2416 revert to '*' not '-' in score matrix, handle... tree | commitdiff
2017-03-29 kiramtJAL-2388 New rendering code, extensions to support... tree | commitdiff
2017-03-29 kiramtJAL-2388 New iterators and tests tree | commitdiff
2017-03-29 gmungocJAL-2416 explicit constant for unknown/unknown identity... tree | commitdiff
2017-03-28 gmungocJAL-2403 JAL-2416 pairwise score unexpected symbols... tree | commitdiff
2017-03-28 gmungocJAL-2416 JAL-2403 remove unused '*' row/column from... tree | commitdiff
2017-03-28 gmungocJAL-2403 further test coverage for ScoreMatrix, min... tree | commitdiff
2017-03-28 gmungocJAL-2416 more test coverage of matrix parser tree | commitdiff
2017-03-27 gmungocJAL-2416 parse score matrices in either NCBI or AAindex... tree | commitdiff
2017-03-27 gmungocJAL-2416 class Javadoc updates prior to parsing changes tree | commitdiff
2017-03-27 gmungocJAL-2468 change score model in PCAModel when switching tree | commitdiff
2017-03-27 gmungocJAL-2416 tidy up after switch from ' ' to '-' in score... tree | commitdiff
2017-03-27 gmungocJAL-2416 score matrix gap symbol (if any) dynamically... tree | commitdiff
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